Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 2172.1 1079 100.0
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1258.0 877 73.5
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1241.9 877 73.3
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1239.9 865 73.5
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1230.7 861 73.6
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1220.7 875 72.0
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1213.4 863 73.1
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1212.6 863 72.3
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1211.1 863 72.2
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1211.1 863 72.1
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1207.2 862 72.4
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1206.8 865 72.1
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1206.8 868 71.7
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1202.2 880 71.1
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1196.8 865 71.6
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1191.8 878 70.7
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1190.6 878 70.4
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1187.6 864 70.8
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1186.4 863 70.5
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1184.5 878 70.4
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1183.7 877 70.1
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1183.3 863 70.8
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1181.4 864 70.6
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1177.9 863 69.8
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1177.9 863 70.3
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1177.5 864 70.8
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1177.2 863 70.5
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1176.4 863 70.2
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1176.4 860 70.7
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1176.0 863 70.2
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1175.6 863 70.1
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1175.2 863 70.2
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1175.2 863 69.9
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1174.8 863 70.3
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1173.7 878 69.9
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1173.7 863 70.1
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1169.8 864 70.4
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1169.1 863 69.5
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1169.1 863 69.5
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1168.3 873 69.5
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1168.3 873 69.6
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1166.0 863 69.6
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1162.1 906 67.3
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1161.4 863 69.6
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1160.6 856 70.3
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1157.1 877 69.1
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1156.7 880 68.3
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1154.0 877 69.0
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1139.4 862 69.6
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1129.8 877 66.6
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1127.1 819 72.0
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1125.5 863 67.9
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1125.5 867 67.0
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1121.7 824 71.0
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1117.1 863 68.1
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1116.7 865 66.9
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1113.2 853 68.1
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1108.2 863 66.4
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1106.7 819 69.8
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1106.3 880 65.5
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1106.3 851 67.3
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1103.2 851 67.3
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1100.1 946 63.6
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1098.2 886 64.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1097.8 851 67.3
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1096.6 863 65.1
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1096.3 852 67.0
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1094.3 862 66.8
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1094.3 851 66.9
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1090.9 863 65.7
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1086.6 862 66.4
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1083.9 879 64.7
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1083.6 880 65.8
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1082.8 851 66.3
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1076.2 865 65.4
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1076.2 863 65.6
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 7.4e-312 1074.7 769 71.0
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.1e-310 1070.1 859 67.3
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 3.2e-310 1068.5 896 62.8
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 4.7e-309 1064.7 894 62.4
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 8.3e-306 1053.9 866 63.4
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 1.4e-305 1053.1 863 63.4
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 1.7e-303 1046.2 873 65.2
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 2.5e-302 1042.3 884 61.3
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 1.6e-301 1039.6 878 62.9
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 6.8e-300 1034.2 863 63.8
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 2.0e-299 1032.7 903 60.9
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 4.3e-294 1015.0 1011 56.1
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 4.6e-288 995.0 824 64.3
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 6.0e-288 994.6 850 61.9
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 8.1e-285 984.2 860 59.7
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 1.3e-274 950.3 863 60.3
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 1.2e-272 943.7 866 57.4
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.0e-266 924.1 818 59.3
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 1.1e-265 920.6 868 56.9
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 2.7e-256 889.4 771 61.6
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 7.4e-254 881.3 871 52.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.0e-242 844.3 686 64.6
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.9e-235 818.5 670 64.5
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.9e-233 813.5 504 78.4
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.1e-228 795.8 766 53.7
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 2.5e-225 786.6 516 75.2
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.6e-209 732.3 428 82.2
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 1.1e-199 701.4 868 43.3
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.6e-198 696.8 858 43.8
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 5.4e-196 689.1 864 43.6
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 5.8e-182 642.5 430 75.1
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.9e-177 627.5 864 40.6
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 5.3e-175 619.4 403 74.9
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.4e-174 616.7 411 75.2
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 8.4e-173 612.1 414 75.1
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.1e-168 597.4 817 40.3
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 3.6e-168 596.7 467 68.3
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.5e-161 573.9 775 44.8
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.8e-152 543.9 820 37.8
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.3e-128 465.3 387 62.5
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.1e-124 452.2 433 57.7
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 3.1e-111 407.5 304 69.4
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 5.4e-103 380.2 383 57.4
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 5.2e-98 363.6 282 68.8
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.7e-93 348.6 306 59.8
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 5.0e-85 320.5 310 53.5
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.2e-83 315.8 751 30.1
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 8.9e-82 309.7 283 58.0
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-73 280.8 314 44.6
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 9.2e-71 273.1 353 49.9
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.0e-69 269.6 804 26.7
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 3.0e-69 268.1 213 62.0
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 9.9e-65 253.1 285 53.0
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.0e-61 243.0 141 83.7
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 3.0e-61 241.5 258 54.3
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.1e-47 196.4 232 49.6
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.2e-39 168.3 209 45.9
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 4.1e-34 151.4 88 84.1
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 2.2e-27 129.0 91 63.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 1.1e-26 126.7 80 75.0
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 1.3e-24 119.8 156 44.2
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 8.5e-24 117.1 81 77.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.1e-20 106.7 109 55.0
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.5e-20 106.3 66 75.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-20 105.9 94 62.8
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 3.7e-19 101.7 80 67.5
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 3.8e-16 91.7 79 55.7
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 6.3e-11 74.3 47 68.1
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 1.4e-10 73.2 179 29.1
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 1.5e-07 63.2 38 71.1
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.5e-07 63.2 94 41.5
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.2e-07 60.8 73 41.1


User provided reference genes

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