Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 0.0e+00 1546.9 849 100.0
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 2.7e-182 643.3 967 47.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.8e-179 633.3 961 45.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.3e-173 614.4 947 45.8
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.8e-171 606.7 949 45.4
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.1e-170 604.7 977 44.6
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 2.0e-169 600.5 976 44.5
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.4e-167 594.3 949 45.3
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 4.4e-161 572.8 1011 41.7
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 2.2e-160 570.5 941 46.0
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 4.2e-159 566.2 972 43.4
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.1e-158 563.9 991 43.8
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 3.0e-157 560.1 964 44.1
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.2e-152 543.9 991 42.8
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.0e-149 535.0 965 41.7
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.3e-148 530.0 965 41.5
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 3.1e-146 523.5 883 41.6
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.7e-144 517.7 970 41.4
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 2.7e-142 510.4 839 47.0
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 7.9e-142 508.8 910 41.2
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.0e-141 508.4 950 40.7
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.3e-140 503.4 949 41.9
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.4e-140 502.3 950 40.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 6.2e-139 499.2 950 41.9
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.1e-138 498.4 990 39.0
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.5e-137 493.0 947 40.9
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.5e-135 487.3 927 42.3
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 2.1e-134 484.2 852 42.5
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 8.7e-133 478.8 960 40.7
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 3.4e-129 466.8 902 40.0
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.7e-128 464.5 941 41.3
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 6.5e-128 462.6 949 40.3
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.9e-127 461.1 958 40.3
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 7.1e-127 459.1 962 39.2
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 4.6e-126 456.4 963 39.4
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 4.6e-126 456.4 906 39.8
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 7.9e-126 455.7 953 39.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.3e-125 454.9 972 39.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 6.7e-125 452.6 905 39.4
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 6.7e-125 452.6 962 39.3
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 5.7e-124 449.5 967 39.4
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 7.4e-124 449.1 918 40.1
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 2.4e-122 444.1 926 39.8
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.9e-119 434.5 918 38.0
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 9.4e-119 432.2 957 39.5
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.6e-118 431.4 766 43.2
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 7.9e-118 429.1 940 38.5
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 4.3e-116 423.3 981 38.5
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 8.2e-115 419.1 956 38.6
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.4e-114 418.3 910 37.5
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 3.8e-112 410.2 980 37.2
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 3.8e-112 410.2 939 38.7
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 2.5e-111 407.5 747 41.9
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 3.2e-111 407.1 929 40.4
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 7.9e-110 402.5 975 35.7
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 8.8e-109 399.1 939 38.4
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 8.8e-109 399.1 890 38.7
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 5.7e-108 396.4 931 36.2
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 5.7e-108 396.4 936 38.6
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 7.4e-108 396.0 763 40.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 2.2e-107 394.4 958 39.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 2.8e-107 394.0 938 37.1
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 4.8e-107 393.3 997 36.2
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.4e-106 391.7 928 38.4
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 7.0e-106 389.4 968 37.6
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 4.5e-105 386.7 1066 35.5
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 3.8e-104 383.6 951 36.9
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 4.2e-103 380.2 984 36.2
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 6.1e-102 376.3 910 36.3
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 6.1e-102 376.3 927 36.6
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 6.7e-101 372.9 920 38.2
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 4.8e-99 366.7 943 36.3
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 6.3e-99 366.3 927 38.0
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 3.1e-98 364.0 958 38.0
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 3.1e-98 364.0 937 36.1
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 5.3e-98 363.2 960 35.5
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.0e-97 361.3 975 33.2
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 4.5e-97 360.1 997 33.5
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.7e-96 358.2 975 36.0
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 5.0e-96 356.7 861 37.6
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 8.5e-96 355.9 982 33.8
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.2e-95 353.6 1059 32.5
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 5.5e-95 353.2 992 34.7
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.6e-92 344.4 839 37.4
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 9.8e-92 342.4 991 33.8
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 8.3e-91 339.3 1011 35.6
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.1e-90 339.0 792 37.9
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 3.1e-90 337.4 929 35.1
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.0e-88 332.4 881 36.2
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.4e-85 322.0 865 35.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 4.4e-84 317.0 747 37.8
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 4.9e-83 313.5 848 35.3
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.0e-81 308.1 962 32.5
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.7e-81 307.8 926 33.9
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 2.9e-80 304.3 1007 32.4
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 6.6e-80 303.1 855 33.5
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.1e-79 302.4 747 36.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.1e-79 302.4 798 33.7
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.9e-79 301.6 872 34.7
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 3.6e-78 297.4 769 37.1
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 6.8e-77 293.1 762 36.0
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 7.5e-76 289.7 933 30.4
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 5.4e-74 283.5 935 32.4
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 2.9e-72 277.7 670 36.4
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.0e-69 267.3 921 33.8
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.4e-66 258.8 1075 30.0
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.6e-62 244.2 915 31.9
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.1e-61 241.1 425 38.4
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.5e-60 238.8 414 38.9
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 3.4e-60 237.7 925 31.4
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 2.2e-59 235.0 926 29.8
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 8.4e-43 179.9 269 44.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 3.1e-37 161.4 130 64.6
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.6e-33 149.1 224 46.9
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.1e-29 136.3 138 57.2
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 6.9e-29 133.7 170 51.8
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 5.1e-24 117.5 228 37.7
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 4.8e-22 110.9 435 32.9
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.2e-22 110.5 99 61.6
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 4.0e-21 107.8 240 39.2
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.2e-20 106.3 98 60.2
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 8.4e-19 100.1 135 48.1
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 3.2e-18 98.2 990 24.6
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.2e-18 98.2 145 40.7
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 4.2e-18 97.8 135 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.2e-17 96.3 125 52.0
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.7e-15 87.4 67 65.7
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 3.4e-12 78.2 60 70.0
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.3e-11 76.3 60 70.0
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.3e-08 66.2 64 48.4
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 6.7e-08 63.9 84 51.2


User provided reference genes

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