Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.5e-124 449.5 222 100.0
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 3.7e-91 338.6 220 76.4
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.5e-89 333.2 220 74.1
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.4e-89 332.0 220 73.6
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 5.9e-89 331.3 220 76.4
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.9e-88 328.9 220 72.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 3.8e-88 328.6 220 72.7
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 8.5e-88 327.4 222 71.6
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.1e-87 327.0 220 71.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.2e-87 325.1 222 71.6
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 5.5e-87 324.7 221 69.7
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.7e-86 322.4 220 70.5
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.8e-85 319.7 220 69.5
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.8e-85 319.7 220 71.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.8e-85 319.7 220 70.9
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.0e-85 318.9 220 70.5
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 8.8e-85 317.4 220 69.1
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.1e-84 317.0 220 69.1
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 2.6e-84 315.8 222 68.5
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.6e-84 315.8 222 68.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 2.6e-84 315.8 222 68.9
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 3.3e-84 315.5 221 69.7
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 3.3e-84 315.5 220 69.5
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.3e-84 315.5 220 70.0
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 4.4e-84 315.1 220 71.4
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-83 313.5 220 70.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.2e-83 312.8 223 68.6
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 2.2e-83 312.8 223 68.6
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.2e-83 312.8 220 68.2
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.8e-83 311.6 220 67.7
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.8e-82 309.7 220 68.2
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 3.1e-82 308.9 220 66.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 3.1e-82 308.9 223 67.7
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.1e-82 308.9 220 67.7
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.1e-82 308.9 220 67.3
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.1e-82 308.5 220 69.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.0e-82 307.8 221 67.9
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.0e-82 307.8 220 69.1
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 9.1e-82 307.4 220 66.4
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 9.1e-82 307.4 220 67.7
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.6e-81 305.8 223 65.9
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.6e-81 305.8 220 67.3
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.5e-81 305.4 221 67.4
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 3.5e-81 305.4 220 67.7
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.5e-81 305.4 220 67.7
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.9e-81 304.7 221 66.5
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 7.7e-81 304.3 223 66.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.0e-80 303.9 220 66.4
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 2.2e-80 302.8 263 59.3
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.9e-80 302.4 220 66.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 5.0e-80 301.6 220 66.4
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 5.0e-80 301.6 217 65.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.5e-80 301.2 220 65.5
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 8.5e-80 300.8 220 65.5
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-79 300.4 223 66.4
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.5e-79 300.1 220 65.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.5e-79 300.1 220 67.3
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.5e-79 300.1 220 66.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.5e-79 299.3 220 65.5
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 2.5e-79 299.3 217 65.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 3.2e-79 298.9 220 68.2
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 3.2e-79 298.9 221 65.6
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 4.2e-79 298.5 221 64.7
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 5.5e-79 298.1 222 67.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.2e-79 297.7 220 66.8
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.2e-79 297.7 220 64.1
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 9.4e-79 297.4 217 64.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.6e-78 296.6 220 63.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 2.1e-78 296.2 220 62.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.7e-78 295.8 220 65.5
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.6e-78 295.4 232 64.7
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 6.1e-78 294.7 244 62.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-77 293.1 277 56.7
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.0e-77 292.4 220 63.6
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 8.8e-77 290.8 220 61.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.0e-76 289.7 220 67.7
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.6e-76 289.3 220 64.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.7e-76 288.1 271 56.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 9.7e-76 287.3 220 63.6
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 1.3e-75 287.0 220 62.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 2.8e-75 285.8 272 54.8
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 3.7e-75 285.4 220 62.7
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 8.2e-75 284.3 220 62.3
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 3.1e-74 282.3 220 62.3
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 3.5e-73 278.9 220 61.4
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.7e-72 276.6 220 60.5
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 5.0e-72 275.0 220 62.7
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 7.2e-71 271.2 221 61.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 4.0e-69 265.4 188 67.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.2e-68 263.8 214 59.3
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.2e-67 259.6 221 57.9
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.4e-66 256.9 221 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.5e-49 199.1 234 41.5
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 3.5e-49 199.1 232 44.4
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 5.0e-48 195.3 142 66.2
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.9e-43 179.5 225 46.7
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-42 177.6 227 43.6
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 6.0e-41 171.8 141 60.3
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.0e-40 168.7 203 38.9
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.9e-35 152.9 122 62.3
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 4.9e-35 152.1 191 43.5
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-30 136.7 104 61.5
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 6.8e-29 131.7 118 54.2
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-27 126.3 77 77.9
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.4e-26 124.0 176 36.9
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.6e-25 120.6 74 75.7
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 3.0e-24 116.3 182 37.9
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 9.9e-20 101.3 84 57.1
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.9e-19 99.0 60 76.7
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-18 97.4 62 72.6
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 4.2e-18 95.9 147 35.4
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.7e-17 93.2 69 65.2
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.7e-16 90.5 79 51.9
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 6.6e-16 88.6 81 51.9
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-09 67.8 42 66.7
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-09 67.0 59 52.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.3e-07 59.7 58 51.7
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.6e-06 57.4 33 81.8
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-06 57.4 57 43.9


User provided reference genes

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