Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 6.3e-58 227.3 117 100.0
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.3e-36 155.6 116 69.0
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 2.6e-35 152.1 108 70.4
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 5.7e-35 151.0 115 67.8
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 7.5e-35 150.6 114 69.3
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 9.8e-35 150.2 111 68.5
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 9.8e-35 150.2 117 66.7
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.3e-34 149.8 115 67.8
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 4.9e-34 147.9 118 68.6
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 7.0e-33 144.1 117 67.5
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 3.5e-32 141.7 115 69.6
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 5.9e-32 141.0 104 69.2
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 5.9e-32 141.0 104 69.2
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.0e-31 140.2 102 70.6
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.7e-31 139.4 117 64.1
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.9e-31 138.7 111 65.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.8e-31 138.3 108 68.5
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 5.0e-31 137.9 114 68.4
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 8.6e-31 137.1 111 66.7
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.1e-30 136.7 117 63.2
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.5e-30 136.3 116 64.7
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.9e-30 136.0 102 68.6
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 3.3e-30 135.2 107 66.4
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 4.3e-30 134.8 113 66.4
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 7.3e-30 134.0 106 65.1
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 2.1e-29 132.5 111 65.8
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 5.2e-28 127.9 111 63.1
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 6.8e-28 127.5 98 67.3
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 3.4e-27 125.2 109 61.5
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 4.4e-27 124.8 88 77.3
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.9e-26 122.1 108 59.3
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 3.7e-26 121.7 90 68.9
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 4.9e-26 121.3 105 61.0
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 8.3e-26 120.6 94 67.0
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 8.3e-26 120.6 93 68.8
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.4e-25 119.8 105 60.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.1e-25 118.2 105 60.0
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.1e-25 118.2 105 60.0
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 7.0e-25 117.5 106 57.5
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.6e-24 116.3 106 56.6
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.0e-24 115.9 106 56.6
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 2.7e-24 115.5 110 58.2
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.7e-24 115.5 106 58.5
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 6.0e-24 114.4 105 57.1
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 6.0e-24 114.4 111 54.1
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 7.8e-24 114.0 96 60.4
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.0e-23 113.6 93 65.6
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.3e-23 113.2 104 54.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 1.7e-23 112.8 106 57.5
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 2.3e-23 112.5 87 65.5
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 2.3e-23 112.5 105 58.1
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 3.0e-23 112.1 113 55.8
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.0e-23 112.1 106 60.4
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.9e-23 111.7 96 59.4
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.9e-23 111.7 96 59.4
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 3.9e-23 111.7 96 60.4
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 5.0e-23 111.3 108 56.5
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 5.0e-23 111.3 104 53.8
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 8.6e-23 110.5 90 62.2
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 8.6e-23 110.5 93 61.3
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 3.3e-22 108.6 95 57.9
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 9.5e-22 107.1 99 56.6
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 9.5e-22 107.1 90 60.0
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 4.7e-21 104.8 93 60.2
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 6.2e-21 104.4 89 62.9
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 8.0e-21 104.0 90 61.1
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 8.0e-21 104.0 91 59.3
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.4e-20 103.2 109 56.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 8.9e-20 100.5 96 58.3
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 5.8e-19 97.8 108 48.1
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 5.8e-19 97.8 99 54.5
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 5.8e-19 97.8 88 55.7
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.7e-18 96.3 107 51.4
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.7e-18 95.1 86 62.8
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 3.7e-18 95.1 89 56.2
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 1.1e-17 93.6 100 50.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.1e-17 93.6 93 55.9
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.9e-17 92.8 89 56.2
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 1.9e-17 92.8 86 59.3
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.1e-17 91.7 84 60.7
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 6.6e-15 84.3 88 52.3
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 2.5e-14 82.4 86 51.2
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 5.6e-14 81.3 77 57.1
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.8e-13 79.0 92 50.0
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.4e-12 76.6 78 55.1
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 5.2e-12 74.7 82 52.4
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 4.9e-10 68.2 84 50.0
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 9.5e-06 53.9 91 44.0


User provided reference genes

Program Settings