Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44110 Carica papaya HOM05D003830 ORTHO05D004446 3.7e-64 248.4 166 100.0
Cpa.g.c26951.1 Carica papaya HOM05D003830 ORTHO05D004446 1.4e-63 246.5 166 99.4
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 4.2e-47 191.8 167 78.4
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 5.4e-47 191.4 167 80.2
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 7.1e-47 191.0 167 68.9
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 4.6e-46 188.3 167 80.2
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 1.3e-45 186.8 167 80.8
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 3.9e-45 185.3 167 77.2
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 3.9e-45 185.3 167 66.5
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 3.9e-45 185.3 167 79.6
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 6.6e-45 184.5 167 78.4
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.5e-44 182.6 167 76.6
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 4.3e-44 181.8 167 65.3
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 5.6e-44 181.4 174 77.6
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 9.6e-44 180.6 176 74.4
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 9.6e-44 180.6 176 74.4
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 1.3e-43 180.3 150 83.3
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 2.1e-43 179.5 164 75.0
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 4.8e-43 178.3 166 74.1
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 4.8e-43 178.3 160 81.9
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 8.1e-43 177.6 170 71.2
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 8.1e-43 177.6 165 76.4
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 8.1e-43 177.6 167 70.7
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.1e-42 177.2 162 79.0
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 1.1e-42 177.2 167 68.9
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 1.4e-42 176.8 161 65.2
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 1.4e-42 176.8 152 84.2
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 1.4e-42 176.8 168 78.6
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 2.4e-42 176.0 167 62.9
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 2.4e-42 176.0 166 78.9
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 3.1e-42 175.6 167 77.2
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 3.1e-42 175.6 167 73.7
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 4.0e-42 175.3 166 75.9
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 4.0e-42 175.3 166 76.5
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 4.0e-42 175.3 167 79.6
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 4.0e-42 175.3 175 70.9
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 4.0e-42 175.3 167 73.7
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 5.3e-42 174.9 160 78.8
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 9.0e-42 174.1 166 77.7
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 9.0e-42 174.1 157 73.9
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 9.9e-41 170.6 167 74.9
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 2.2e-40 169.5 151 80.1
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 3.8e-40 168.7 192 63.5
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 4.9e-40 168.3 167 74.9
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 4.9e-40 168.3 167 74.9
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 6.4e-40 167.9 167 67.7
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 2.4e-39 166.0 167 73.1
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 2.4e-39 166.0 167 61.1
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 3.2e-39 165.6 152 81.6
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 7.1e-39 164.5 165 75.8
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 7.1e-39 164.5 167 73.7
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 9.3e-39 164.1 150 76.0
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 1.6e-38 163.3 150 80.7
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 1.6e-38 163.3 165 75.8
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 3.5e-38 162.2 167 71.9
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 4.6e-38 161.8 151 63.6
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 5.1e-37 158.3 158 70.9
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 6.7e-37 157.9 159 61.0
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 8.7e-37 157.5 152 77.6
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 8.7e-37 157.5 162 59.9
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 8.7e-37 157.5 167 64.7
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 8.7e-37 157.5 167 66.5
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 1.5e-36 156.8 171 56.7
CSS0021953 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 1.5e-36 156.8 167 74.9
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 5.6e-36 154.8 148 75.0
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 5.6e-36 154.8 164 58.5
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 9.6e-36 154.1 159 59.1
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.6e-35 153.3 174 65.5
Hma1.2p1_1340F.1_g276740 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.6e-35 153.3 171 74.3
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 2.1e-35 152.9 166 69.3
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 2.1e-35 152.9 148 70.9
Lalb_Chr11g0075691 Lupinus albus HOM05D003830 ORTHO05D004446 3.7e-35 152.1 167 67.1
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 3.7e-35 152.1 173 57.2
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 4.8e-35 151.8 167 67.1
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 6.2e-35 151.4 161 70.2
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 6.2e-35 151.4 167 70.7
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 8.1e-35 151.0 172 55.8
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 1.8e-34 149.8 181 66.9
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 3.1e-34 149.1 167 67.1
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 4.0e-34 148.7 167 67.7
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 4.0e-34 148.7 165 67.9
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 9.0e-34 147.5 197 52.3
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 9.0e-34 147.5 197 51.3
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 9.0e-34 147.5 156 65.4
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 1.2e-33 147.1 166 69.9
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.2e-33 147.1 184 56.0
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.2e-33 147.1 184 56.0
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 2.0e-33 146.4 150 72.7
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 2.6e-33 146.0 164 59.1
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 3.4e-33 145.6 166 66.9
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 4.5e-33 145.2 179 58.7
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 5.8e-33 144.8 166 71.7
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 7.6e-33 144.4 150 65.3
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.3e-32 143.7 167 68.3
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 1.7e-32 143.3 167 58.1
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 2.9e-32 142.5 160 68.8
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 3.8e-32 142.1 167 65.3
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 4.9e-32 141.7 167 60.5
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 1.1e-31 140.6 166 53.0
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 1.4e-31 140.2 167 71.9
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 2.5e-31 139.4 170 60.0
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 5.5e-31 138.3 175 64.0
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 5.5e-31 138.3 166 66.9
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 7.1e-31 137.9 166 65.7
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 2.7e-30 136.0 152 69.7
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 2.7e-30 136.0 152 69.7
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 3.5e-30 135.6 169 68.0
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 7.9e-30 134.4 206 57.8
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 1.3e-29 133.7 163 66.3
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 1.3e-29 133.7 163 66.3
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 3.9e-29 132.1 167 53.3
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 3.9e-29 132.1 176 59.1
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 8.7e-29 131.0 167 53.9
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 1.1e-28 130.6 150 68.7
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.1e-28 130.6 166 59.6
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 1.5e-28 130.2 151 55.6
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 2.1e-27 126.3 167 68.9
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 2.8e-27 125.9 167 64.1
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 4.8e-27 125.2 167 64.1
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 6.2e-27 124.8 166 60.2
Actinidia30674 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.4e-26 123.6 137 73.0
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 1.4e-26 123.6 162 57.4
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 2.4e-26 122.9 167 51.5
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 6.9e-26 121.3 166 49.4
unitig_747.g21131 Utricularia gibba HOM05D003830 ORTHO05D004446 1.5e-25 120.2 166 51.8
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 2.6e-25 119.4 165 65.5
CDE04G3030 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 4.5e-25 118.6 166 50.0
CDE07G1392 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 7.6e-25 117.9 165 58.2
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 3.2e-23 112.5 166 64.5
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 7.1e-23 111.3 166 60.2
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 7.1e-23 111.3 180 55.6
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 6.7e-21 104.8 171 45.0
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 1.1e-20 104.0 166 45.8
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 3.7e-19 99.0 168 53.0
Lsat_1_v5_gn_4_2860 Lactuca sativa HOM05D003830 ORTHO05D004446 1.4e-18 97.1 166 59.6
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 2.0e-17 93.2 93 60.2
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 2.6e-17 92.8 176 51.7
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 4.5e-17 92.0 167 47.3
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 7.7e-17 91.3 133 47.4
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.9e-15 86.7 166 47.0
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 1.6e-14 83.6 145 49.0
PSO063G5558 Papaver somniferum HOM05D003830 ORTHO05D004446 4.6e-14 82.0 220 33.6
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 6.7e-13 78.2 91 49.5
EL10Ac2g04813 Beta vulgaris HOM05D001930 ORTHO05D001345 4.2e-07 58.9 95 45.3
Os01g0141900 Oryza sativa ssp. japonica HOM05D001930 ORTHO05D001345 5.5e-07 58.5 101 43.6
Zm00001eb124690 Zea mays HOM05D001930 ORTHO05D001345 7.2e-07 58.2 77 50.6
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 1.6e-06 57.0 166 41.0
unitig_22.g6413 Utricularia gibba HOM05D003830 ORTHO05D004446 1.6e-06 57.0 151 36.4
AL3G20020 Arabidopsis lyrata HOM05D001930 ORTHO05D001345 2.1e-06 56.6 56 55.4
Cpa.g.sc163.20 Carica papaya HOM05D001930 ORTHO05D001345 2.7e-06 56.2 97 41.2
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 6.1e-06 55.1 96 41.7
Glyma.02G256600 Glycine max HOM05D001930 ORTHO05D001345 7.9e-06 54.7 74 47.3
Lalb_Chr18g0052641 Lupinus albus HOM05D001930 ORTHO05D001345 7.9e-06 54.7 75 49.3
Thecc.10G020700 Theobroma cacao HOM05D001930 ORTHO05D001345 7.9e-06 54.7 75 48.0


User provided reference genes

Program Settings