Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 8.6e-90 333.6 161 100.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.1e-76 287.3 162 85.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.7e-75 285.4 161 83.9
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 7.8e-75 283.9 162 85.2
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.0e-74 283.5 163 82.2
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.7e-74 282.7 164 82.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 6.6e-74 280.8 162 82.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.5e-73 279.6 163 82.2
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.5e-73 279.6 161 82.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 3.3e-73 278.5 161 81.4
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 3.3e-73 278.5 157 82.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 4.3e-73 278.1 164 81.7
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 4.3e-73 278.1 163 82.2
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.3e-73 278.1 161 81.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.6e-73 277.7 161 80.1
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.6e-73 277.7 162 81.5
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.6e-73 277.7 162 83.3
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 9.5e-73 276.9 162 81.5
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 9.5e-73 276.9 162 81.5
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.5e-73 276.9 161 81.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.1e-72 275.8 163 78.5
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.8e-72 275.4 163 82.2
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.7e-72 274.6 161 78.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.7e-72 274.6 162 79.0
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.7e-72 274.6 161 79.5
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 6.2e-72 274.2 161 80.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 8.1e-72 273.9 162 80.2
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 8.1e-72 273.9 158 83.5
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 8.1e-72 273.9 160 81.2
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.1e-71 273.5 162 79.6
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.1e-71 273.5 163 81.6
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.1e-71 273.5 162 81.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.1e-71 273.5 146 89.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.1e-71 273.5 161 81.4
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-71 273.1 163 81.6
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.8e-71 272.7 161 81.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.8e-71 272.7 162 79.0
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.4e-71 272.3 145 88.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.1e-71 271.9 162 79.0
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 3.1e-71 271.9 157 80.9
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 4.0e-71 271.6 165 77.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 4.0e-71 271.6 156 79.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.2e-71 271.2 161 81.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.9e-71 270.4 165 78.2
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.9e-71 270.4 165 78.2
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 8.9e-71 270.4 145 88.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-70 270.0 161 80.7
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.2e-70 270.0 165 80.6
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.2e-70 270.0 158 81.0
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-70 269.6 160 80.6
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-70 269.6 160 80.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-70 269.6 158 79.1
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.0e-70 269.2 145 86.2
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 2.6e-70 268.9 166 78.3
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.4e-70 268.5 165 78.2
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 3.4e-70 268.5 161 76.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.4e-70 268.5 147 84.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.4e-70 268.1 165 78.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.4e-70 268.1 165 78.8
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.4e-70 268.1 165 78.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 4.4e-70 268.1 165 76.4
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 5.8e-70 267.7 166 78.9
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.8e-70 267.7 162 77.2
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.8e-70 267.7 159 81.1
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 5.8e-70 267.7 165 77.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 7.6e-70 267.3 155 80.0
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 7.6e-70 267.3 161 79.5
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 7.6e-70 267.3 165 77.6
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.9e-70 266.9 165 78.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-69 266.5 162 79.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.3e-69 266.5 165 77.6
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-69 266.5 165 77.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-69 266.5 165 77.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-69 266.5 158 78.5
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.2e-69 265.8 151 81.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.2e-69 265.8 157 79.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.2e-69 265.8 147 83.7
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.2e-69 265.8 164 78.0
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.2e-69 265.8 146 87.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.9e-69 265.4 158 79.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-69 265.4 158 81.0
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.9e-69 265.4 161 78.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.8e-69 265.0 162 77.2
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 4.9e-69 264.6 165 74.5
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.9e-69 264.6 161 78.3
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 6.4e-69 264.2 165 78.2
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.4e-69 263.8 143 86.0
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.1e-68 263.5 165 77.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-68 263.1 158 78.5
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.4e-68 263.1 145 84.8
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.4e-68 263.1 150 83.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.4e-68 262.3 158 80.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.4e-68 262.3 158 80.4
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.4e-68 262.3 165 73.9
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 3.2e-68 261.9 146 82.2
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.1e-68 261.5 151 80.8
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 7.1e-68 260.8 158 75.3
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.1e-68 260.8 166 75.9
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 9.2e-68 260.4 161 76.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-67 260.0 162 75.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.6e-67 259.6 150 78.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.6e-67 259.6 143 83.9
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.1e-67 259.2 156 77.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-67 259.2 159 77.4
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.1e-67 259.2 147 81.0
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.7e-67 258.8 144 81.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.7e-67 258.8 156 78.2
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 3.5e-67 258.5 145 82.8
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.5e-67 258.5 156 77.6
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.5e-67 258.5 165 75.8
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 6.0e-67 257.7 157 76.4
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 6.0e-67 257.7 146 80.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 7.8e-67 257.3 145 80.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 7.8e-67 257.3 145 80.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 7.8e-67 257.3 161 77.0
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.0e-66 256.9 155 79.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.3e-66 256.5 144 81.9
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.7e-66 256.1 146 80.1
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 3.0e-66 255.4 150 79.3
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.0e-66 255.4 150 79.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.9e-66 255.0 146 79.5
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 3.9e-66 255.0 144 81.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 3.9e-66 255.0 146 82.9
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 5.1e-66 254.6 148 79.7
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 6.6e-66 254.2 147 79.6
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 8.6e-66 253.8 147 79.6
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.1e-65 253.4 146 82.2
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.5e-65 253.1 165 73.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.9e-65 252.7 150 78.7
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.5e-65 252.3 164 73.2
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.5e-65 252.3 165 74.5
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.8e-64 248.8 143 81.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.6e-64 248.4 143 80.4
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 3.6e-64 248.4 157 72.0
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 9.0e-63 243.8 143 75.5
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.5e-62 243.0 143 80.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.0e-62 242.7 161 75.2
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 8.4e-61 237.3 165 70.9
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.9e-60 236.1 165 72.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 5.4e-60 234.6 166 70.5
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.3e-58 229.9 121 89.3
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.7e-58 229.6 154 70.1
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 8.7e-58 227.3 155 69.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-56 223.4 144 72.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 9.0e-55 217.2 121 81.0
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.9e-53 212.2 143 72.0
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.8e-53 211.8 121 81.0
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 5.4e-52 208.0 121 82.6
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.1e-52 207.6 135 74.8
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.5e-51 205.3 121 82.6
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.1e-49 200.3 142 64.1
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.5e-49 199.1 126 75.4
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.6e-48 196.4 147 66.0
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-46 189.9 113 79.6
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.6e-43 178.3 101 82.2
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.5e-41 173.3 145 59.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.1e-39 167.2 153 53.6
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-37 160.6 97 77.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 9.7e-33 144.1 79 84.8
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.1e-31 138.7 91 73.6
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.5e-30 135.2 77 81.8
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.2e-28 129.0 70 84.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.1e-23 112.5 93 59.1
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 8.5e-13 77.8 57 68.4


User provided reference genes

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