Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 0.0e+00 1231.5 619 100.0
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.7e-279 965.7 573 87.3
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 4.2e-278 961.1 573 86.2
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 3.1e-257 891.7 574 81.5
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 3.1e-228 795.4 577 72.3
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 4.0e-228 795.0 578 72.3
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.2e-225 785.4 580 71.0
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 2.7e-224 782.3 584 71.6
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 7.8e-224 780.8 564 73.9
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.0e-223 778.9 569 71.0
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 3.0e-223 778.9 563 72.6
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 5.6e-222 774.6 577 69.8
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.1e-220 770.4 574 70.4
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.8e-220 769.6 581 70.2
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 2.4e-220 769.2 578 69.4
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.1e-220 768.8 576 69.8
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 8.9e-220 767.3 559 71.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 8.9e-220 767.3 580 69.7
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.4e-219 765.0 580 70.5
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 5.8e-219 764.6 581 70.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 4.9e-218 761.5 562 70.8
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.1e-217 760.4 562 70.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.9e-217 759.6 581 69.4
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 4.2e-217 758.4 569 70.1
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 5.4e-217 758.1 565 70.6
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 9.3e-217 757.3 567 71.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.5e-216 755.4 582 69.9
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 3.5e-216 755.4 551 71.5
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.7e-215 753.1 560 70.2
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.3e-215 752.7 560 70.2
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 3.0e-215 752.3 557 69.7
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 3.9e-215 751.9 579 68.7
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.6e-215 751.1 558 70.8
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.5e-214 750.0 573 68.9
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.5e-214 750.0 564 69.9
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 3.3e-214 748.8 641 64.4
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 4.3e-214 748.4 577 68.3
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 8.1e-213 744.2 561 69.2
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-212 743.4 562 70.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.8e-212 743.0 565 68.8
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.0e-212 741.9 577 67.8
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.3e-212 741.5 565 68.7
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 5.8e-211 738.0 574 68.1
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 5.8e-211 738.0 564 69.5
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 7.6e-211 737.6 564 69.0
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.2e-210 736.1 562 69.4
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.9e-210 735.7 552 69.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 2.4e-209 732.6 583 68.1
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 3.2e-209 732.3 561 68.6
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 4.2e-209 731.9 561 68.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 7.1e-209 731.1 563 68.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 2.7e-208 729.2 563 68.0
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.0e-208 728.0 579 67.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 3.9e-207 725.3 578 66.8
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.5e-206 723.4 581 67.3
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.5e-206 723.4 568 68.3
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 2.5e-206 722.6 580 66.0
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 2.5e-206 722.6 580 66.0
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.6e-206 721.5 558 68.3
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 9.6e-206 720.7 565 67.3
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-205 719.9 561 67.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.8e-205 719.2 580 65.9
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 3.6e-205 718.8 581 66.8
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 6.2e-205 718.0 558 67.7
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 6.9e-204 714.5 580 65.7
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 9.0e-204 714.1 566 67.5
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.2e-203 713.8 571 66.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.2e-203 713.8 555 68.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.0e-203 713.0 580 65.5
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.7e-202 709.9 525 72.2
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.2e-202 709.5 568 66.7
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.2e-201 705.7 560 66.6
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.5e-201 704.9 568 66.2
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.5e-200 702.2 560 65.9
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 3.5e-200 702.2 597 64.2
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 8.7e-199 697.6 574 65.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 2.5e-198 696.0 563 65.4
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 9.6e-198 694.1 578 63.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.8e-197 692.6 523 70.2
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 2.2e-194 682.9 581 64.7
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 3.8e-194 682.2 552 65.2
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 3.8e-194 682.2 571 63.2
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.3e-191 673.7 559 63.7
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.1e-190 670.6 550 63.3
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.5e-190 670.2 565 64.1
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.9e-190 669.8 562 63.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.6e-190 667.5 511 68.1
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.1e-189 666.4 558 64.3
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.3e-189 664.8 522 68.4
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 3.4e-187 659.1 563 61.8
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 6.5e-186 654.8 527 66.4
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 6.7e-183 644.8 579 61.1
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 3.1e-180 636.0 630 60.2
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 9.1e-180 634.4 567 61.7
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.2e-173 613.2 583 59.5
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 4.8e-173 612.1 420 73.8
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.0e-167 594.3 575 59.3
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-164 583.9 409 74.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 5.5e-161 572.0 407 71.3
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.8e-119 434.1 356 66.6
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 8.9e-119 431.8 580 47.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.4e-116 423.7 587 45.7
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.4e-108 397.9 580 40.5
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.7e-106 391.0 579 41.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.3e-105 386.3 324 63.0
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.4e-103 381.3 553 41.6
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.4e-102 376.3 325 61.5
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.7e-99 367.1 289 66.4
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.9e-97 360.9 615 37.2
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 7.6e-94 349.0 303 62.0
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.7e-91 340.5 362 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.6e-88 331.3 573 34.7
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 9.6e-81 305.4 455 40.7
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.0e-74 285.4 340 51.8
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.4e-71 275.0 209 67.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.9e-69 267.3 647 30.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.3e-58 231.1 222 56.3
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.1e-55 220.3 162 69.1
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.6e-54 217.6 317 44.5
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.5e-52 211.1 151 69.5
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.9e-45 187.6 98 88.8
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 2.0e-41 174.9 738 24.3
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.6e-41 174.5 207 47.8
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.7e-41 173.3 117 72.6
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-38 164.9 111 75.7
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.8e-34 151.8 127 60.6
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.9e-28 131.7 97 67.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 8.3e-24 116.3 58 94.8
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 5.9e-22 110.2 212 33.0
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.2e-18 97.1 95 54.7
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.4e-15 89.0 51 86.3
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.9e-15 88.6 98 49.0
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.7e-08 65.5 52 69.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.9e-08 63.9 184 28.8
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 7.8e-06 56.6 61 54.1


User provided reference genes

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