Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 3.2e-113 411.8 208 100.0
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 4.1e-92 341.7 210 85.2
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 2.0e-91 339.3 210 84.8
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 1.1e-89 333.6 208 82.2
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 8.0e-88 327.4 209 81.8
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 2.9e-74 282.3 208 70.7
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 6.5e-74 281.2 212 71.7
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 1.9e-73 279.6 208 70.2
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 4.2e-73 278.5 208 67.3
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 1.6e-72 276.6 208 68.3
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 4.7e-72 275.0 217 65.4
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 8.0e-72 274.2 208 66.3
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 5.2e-71 271.6 208 64.9
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 8.8e-71 270.8 215 67.0
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.2e-70 270.4 209 68.4
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 3.4e-70 268.9 210 68.6
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 5.7e-70 268.1 230 62.6
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 1.7e-69 266.5 215 65.6
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 3.7e-69 265.4 209 67.0
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 3.7e-69 265.4 217 66.8
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 3.7e-69 265.4 210 65.7
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 4.8e-69 265.0 213 67.6
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 1.8e-68 263.1 210 65.7
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 1.8e-68 263.1 208 63.0
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 2.4e-68 262.7 211 64.0
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 2.4e-68 262.7 210 65.7
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 2.7e-67 259.2 207 64.3
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 1.0e-66 257.3 208 64.4
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 2.9e-66 255.8 217 62.7
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 5.0e-66 255.0 201 66.2
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 6.6e-66 254.6 205 65.9
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 6.6e-66 254.6 208 63.5
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 1.1e-65 253.8 200 65.5
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 1.1e-65 253.8 208 62.0
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 1.1e-65 253.8 182 65.9
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 1.5e-65 253.4 207 62.3
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 1.9e-65 253.1 180 67.8
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 1.9e-65 253.1 182 66.5
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 3.3e-65 252.3 208 62.0
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 3.3e-65 252.3 182 66.5
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 3.3e-65 252.3 182 65.9
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 5.5e-65 251.5 208 63.0
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 7.2e-65 251.1 177 66.7
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 9.5e-65 250.8 208 63.0
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 1.2e-64 250.4 188 63.8
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 1.2e-64 250.4 236 59.3
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 1.2e-64 250.4 180 67.2
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 1.6e-64 250.0 208 61.5
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 1.6e-64 250.0 209 61.7
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 1.6e-64 250.0 175 70.3
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 8.0e-64 247.7 196 63.8
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 1.8e-63 246.5 199 64.3
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 1.8e-63 246.5 185 66.5
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 3.0e-63 245.7 209 61.2
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 3.0e-63 245.7 204 63.2
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 3.0e-63 245.7 198 62.1
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 4.0e-63 245.4 178 67.4
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 6.8e-63 244.6 198 61.6
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 6.8e-63 244.6 178 69.7
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.2e-62 243.8 180 67.2
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.5e-62 243.4 212 60.8
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 2.0e-62 243.0 213 59.6
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.0e-62 243.0 208 61.1
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 9.8e-62 240.7 197 61.9
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 2.8e-61 239.2 212 60.8
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 2.8e-61 239.2 196 63.8
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 2.4e-60 236.1 204 61.3
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 4.1e-60 235.3 183 62.8
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 5.4e-60 235.0 209 59.8
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 7.0e-60 234.6 197 60.9
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 4.5e-59 231.9 223 57.8
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 4.5e-59 231.9 204 58.3
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 7.8e-59 231.1 206 60.2
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 1.0e-58 230.7 178 64.0
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 2.3e-58 229.6 187 64.7
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 2.3e-58 229.6 183 61.2
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 3.8e-58 228.8 173 64.7
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 8.6e-58 227.6 199 58.3
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 1.9e-57 226.5 181 64.6
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 2.5e-57 226.1 172 65.1
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 2.5e-57 226.1 172 65.1
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 2.5e-57 226.1 172 65.1
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 2.5e-57 226.1 178 65.2
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 3.3e-57 225.7 211 58.8
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 7.3e-57 224.6 167 65.9
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 9.5e-57 224.2 210 58.1
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 9.5e-57 224.2 170 64.1
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 2.1e-56 223.0 180 64.4
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 6.1e-56 221.5 173 64.7
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 1.4e-55 220.3 203 59.6
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 1.8e-55 219.9 197 56.3
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 3.1e-55 219.2 173 64.2
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 3.1e-55 219.2 199 57.8
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 5.2e-55 218.4 214 56.1
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 1.2e-54 217.2 170 64.1
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 1.5e-54 216.9 214 57.0
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 3.4e-54 215.7 210 56.7
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 9.8e-54 214.2 205 58.5
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 1.3e-53 213.8 208 55.3
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 4.9e-53 211.8 150 65.3
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 6.6e-50 201.4 181 57.5
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 1.2e-48 197.2 186 55.4
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 3.0e-42 176.0 225 47.6
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 1.1e-36 157.5 195 44.6
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 9.2e-36 154.5 114 70.2
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 9.5e-33 144.4 208 38.5
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.2e-32 144.1 179 44.7
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 4.7e-32 142.1 221 39.8
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 4.7e-32 142.1 172 41.3
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 1.5e-30 137.1 100 70.0
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 4.4e-30 135.6 157 46.5
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 9.9e-22 107.8 202 33.7
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 1.3e-21 107.5 90 58.9
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 8.4e-21 104.8 179 31.3
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 3.2e-20 102.8 104 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 4.6e-19 99.0 230 32.6
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 3.0e-18 96.3 196 29.1
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 3.1e-15 86.3 127 40.9
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 9.9e-14 81.3 102 45.1
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 1.2e-11 74.3 177 28.8
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 1.5e-09 67.4 105 38.1


User provided reference genes

Program Settings