Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 5.9e-129 464.2 225 100.0
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.0e-104 383.6 225 83.6
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.9e-104 382.1 227 81.5
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 5.9e-97 357.8 227 77.1
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 4.9e-75 285.0 216 61.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.7e-73 279.3 216 60.2
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.7e-72 276.6 218 57.8
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 3.0e-72 275.8 218 57.8
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 6.6e-72 274.6 215 60.5
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 3.3e-71 272.3 226 58.4
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 4.3e-71 271.9 208 60.6
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.3e-71 271.9 208 59.6
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.2e-70 270.4 216 59.7
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.8e-70 269.2 208 59.1
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 6.2e-70 268.1 226 57.5
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 6.2e-70 268.1 202 59.9
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.1e-69 265.8 221 55.7
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 3.4e-68 262.3 208 60.1
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.4e-68 262.3 225 56.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 5.8e-68 261.5 225 55.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.3e-67 260.4 223 54.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.3e-67 260.4 208 57.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.3e-67 260.4 208 57.7
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.7e-67 260.0 241 53.9
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.4e-67 258.1 225 54.7
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.4e-66 256.9 208 57.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 4.2e-66 255.4 220 55.9
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 4.2e-66 255.4 208 56.7
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.2e-65 253.8 208 58.2
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.2e-65 253.8 208 56.7
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.2e-65 253.8 216 58.8
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.7e-65 252.7 223 56.1
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 2.7e-65 252.7 208 59.6
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.5e-65 252.3 208 58.2
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 4.6e-65 251.9 208 59.1
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 6.0e-65 251.5 208 55.8
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 6.0e-65 251.5 215 53.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 7.8e-65 251.1 225 53.3
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.8e-65 251.1 211 57.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 7.8e-65 251.1 221 54.3
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.0e-64 250.8 225 53.3
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.7e-64 250.0 208 57.7
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.9e-64 248.8 220 52.7
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 5.1e-64 248.4 214 55.1
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 2.5e-63 246.1 208 54.3
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.5e-63 246.1 212 57.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 2.5e-63 246.1 220 53.2
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.3e-63 245.7 219 55.3
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 4.3e-63 245.4 236 53.0
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 4.3e-63 245.4 236 53.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.3e-62 243.8 229 52.4
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.3e-62 243.8 208 55.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 8.1e-62 241.1 236 52.5
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.4e-61 240.4 219 52.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.1e-61 239.2 235 52.8
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.2e-60 237.3 239 52.3
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.5e-60 236.9 242 51.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.5e-60 236.9 242 51.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 4.4e-60 235.3 220 51.8
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 9.9e-60 234.2 220 49.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.9e-59 232.6 196 57.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 4.9e-59 231.9 220 50.0
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 4.9e-59 231.9 228 50.9
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 8.4e-59 231.1 217 50.7
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 8.4e-59 231.1 217 50.7
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 8.4e-59 231.1 211 52.6
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.4e-58 230.3 209 52.6
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.4e-58 230.3 208 51.4
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.9e-58 229.9 217 50.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.2e-58 229.2 208 50.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 4.2e-58 228.8 231 51.5
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 7.1e-58 228.0 208 48.6
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.2e-57 227.3 223 48.9
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.2e-57 227.3 230 49.6
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.6e-57 226.9 208 52.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 2.7e-57 226.1 193 54.4
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-56 224.2 218 49.5
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 5.1e-56 221.9 218 52.3
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 6.6e-56 221.5 182 57.1
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 3.3e-55 219.2 218 52.3
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 4.3e-55 218.8 199 52.8
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.3e-55 218.8 218 52.3
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 9.6e-55 217.6 192 54.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.1e-54 216.5 208 50.5
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.6e-54 215.7 208 50.0
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 6.2e-54 214.9 208 53.8
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 8.1e-54 214.5 247 44.1
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 8.1e-54 214.5 210 51.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 2.4e-53 213.0 217 47.9
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.2e-52 210.7 224 52.7
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 2.6e-52 209.5 261 41.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 4.9e-51 205.3 225 45.8
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 8.4e-51 204.5 194 48.5
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-50 204.1 236 47.9
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.4e-50 203.8 208 45.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.4e-50 203.0 208 50.0
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.2e-49 200.7 211 50.7
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.2e-49 200.7 194 49.5
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.1e-49 199.9 156 62.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.3e-48 196.4 208 45.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.9e-48 195.7 178 55.1
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 6.7e-48 194.9 164 56.1
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.3e-47 192.6 208 47.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 4.3e-47 192.2 151 60.9
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 5.6e-47 191.8 207 46.9
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 4.8e-46 188.7 209 43.5
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.1e-42 177.6 134 64.9
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 7.9e-41 171.4 213 40.4
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.1e-39 167.5 208 37.5
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 9.6e-39 164.5 126 61.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 4.8e-38 162.2 212 40.1
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.5e-36 157.1 209 41.1
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 2.0e-36 156.8 129 57.4
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.4e-36 156.0 135 49.6
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 3.5e-33 146.0 114 57.0
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.3e-32 143.3 145 46.9
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.9e-32 142.5 98 66.3
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 8.7e-32 141.4 91 70.3
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.2e-30 136.7 192 42.7
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.2e-30 134.8 101 66.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.2e-30 134.8 104 62.5
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.1e-29 134.4 98 60.2
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 6.9e-29 131.7 96 64.6
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.5e-26 122.1 141 47.5
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 7.9e-25 118.2 70 78.6
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-24 117.5 98 59.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 3.0e-24 116.3 112 48.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 5.1e-24 115.5 140 41.4
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-22 109.4 109 54.1
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.0e-19 101.3 75 65.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 2.2e-19 100.1 68 70.6
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.9e-19 99.8 101 44.6
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-18 97.8 70 60.0
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 6.3e-14 82.0 63 58.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 1.4e-13 80.9 103 42.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.1e-13 79.3 155 33.5
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 3.5e-12 76.3 71 54.9
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 4.5e-12 75.9 95 35.8
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.9e-11 73.2 85 41.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 6.5e-11 72.0 121 33.9
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.7e-09 65.9 84 35.7
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 6.1e-09 65.5 80 40.0
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 8.0e-09 65.1 109 38.5
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 1.4e-08 64.3 41 68.3
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.8e-08 63.9 41 68.3
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.5e-07 60.8 133 30.1
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 2.6e-07 60.1 45 55.6
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.6e-07 60.1 62 41.9
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.7e-07 58.9 59 52.5
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 3.7e-06 56.2 123 26.8


User provided reference genes

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