Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 5.4e-153 544.3 272 100.0
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 7.1e-145 517.3 287 91.3
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.6e-141 505.0 287 89.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 9.9e-131 470.3 299 82.9
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.5e-123 446.4 279 78.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.0e-123 446.0 280 77.9
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.9e-122 442.2 272 77.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.2e-121 438.3 279 75.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 4.2e-121 438.3 272 76.8
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 5.5e-121 438.0 271 77.1
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.1e-120 436.0 279 75.6
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.5e-120 435.3 276 76.1
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.5e-120 435.3 278 77.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.6e-120 434.9 279 76.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.6e-120 434.9 279 75.6
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 4.6e-120 434.9 280 74.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.8e-119 433.0 272 76.1
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 3.0e-119 432.2 271 76.8
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 5.1e-119 431.4 279 76.0
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.1e-119 431.4 276 74.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 5.1e-119 431.4 278 75.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.7e-119 431.0 278 75.2
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.1e-118 430.3 279 74.9
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.9e-118 429.5 270 75.9
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.5e-118 429.1 272 75.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.5e-118 429.1 273 76.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.3e-118 428.3 272 75.4
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 4.3e-118 428.3 280 75.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 9.6e-118 427.2 279 73.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.3e-117 426.8 271 76.0
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.6e-117 426.4 270 74.8
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.6e-117 426.4 272 75.0
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.6e-117 426.4 271 77.1
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.8e-117 425.6 273 74.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.8e-117 425.6 271 76.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.8e-117 425.6 278 74.5
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 8.2e-117 424.1 270 73.7
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.1e-116 423.7 277 76.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.4e-116 423.3 277 76.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.4e-116 423.3 271 75.6
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.4e-116 423.3 272 74.6
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.8e-116 422.9 271 76.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 3.1e-116 422.2 274 75.2
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.1e-116 422.2 277 75.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 5.3e-116 421.4 272 76.5
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.3e-116 421.4 276 74.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.3e-116 421.4 271 75.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 6.9e-116 421.0 272 75.7
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 9.0e-116 420.6 272 75.4
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 9.0e-116 420.6 276 72.5
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 9.0e-116 420.6 278 73.0
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 9.0e-116 420.6 272 76.5
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-115 420.2 272 75.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.2e-115 420.2 276 74.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.2e-115 420.2 271 74.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.5e-115 419.9 275 74.2
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.5e-115 419.9 272 75.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.5e-115 419.9 270 74.4
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.0e-115 419.5 271 75.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.6e-115 419.1 275 75.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 3.4e-115 418.7 272 75.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.4e-115 418.7 270 74.1
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 3.4e-115 418.7 270 73.0
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 3.4e-115 418.7 270 73.0
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 4.5e-115 418.3 271 75.6
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 7.6e-115 417.5 271 75.3
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 7.6e-115 417.5 271 75.6
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.7e-114 416.4 271 74.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.2e-114 416.0 269 74.0
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 5.0e-114 414.8 271 74.9
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.4e-114 414.1 273 74.4
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.4e-114 414.1 273 74.4
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.4e-113 413.3 271 75.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.4e-113 413.3 270 73.3
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.2e-113 412.1 272 75.0
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 3.5e-112 408.7 270 71.9
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.8e-111 406.4 257 77.0
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.0e-111 405.6 262 75.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.9e-111 405.2 271 73.4
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 6.7e-111 404.4 302 67.5
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 6.7e-111 404.4 271 73.1
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 8.7e-111 404.1 277 71.1
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-110 403.7 271 73.4
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.9e-110 402.9 271 73.4
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 3.3e-110 402.1 271 72.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.3e-110 402.1 271 70.5
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.7e-110 401.4 270 73.7
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.7e-109 398.7 304 65.1
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.8e-108 396.4 270 70.7
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 9.0e-108 394.0 279 70.6
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.2e-107 393.7 270 70.0
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.3e-106 390.2 270 68.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 7.2e-105 384.4 301 64.8
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 9.4e-105 384.0 261 69.7
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 2.1e-104 382.9 279 68.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 8.8e-103 377.5 389 52.4
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.5e-102 376.7 271 66.1
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 4.3e-102 375.2 271 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.1e-100 369.0 272 62.1
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 3.4e-99 365.5 244 73.4
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 4.5e-99 365.2 272 61.8
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.6e-96 355.5 245 69.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 6.1e-96 354.8 241 71.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.8e-95 353.2 217 77.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.6e-94 349.4 270 64.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 4.4e-94 348.6 260 66.5
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 9.7e-94 347.4 223 75.8
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 6.3e-93 344.7 271 61.6
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 5.5e-89 331.6 259 64.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.2e-88 330.5 271 59.8
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.7e-88 329.3 250 65.6
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.0e-87 327.4 220 71.8
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 3.0e-87 325.9 259 64.1
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-86 323.9 259 63.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 9.1e-84 314.3 272 55.9
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.7e-83 312.8 273 57.1
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.1e-81 307.4 197 75.1
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.6e-80 303.5 177 80.2
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 6.1e-80 301.6 260 60.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.4e-76 289.7 288 51.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.1e-76 289.3 259 57.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 5.4e-68 261.9 158 76.6
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 5.9e-67 258.5 276 47.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.0e-63 247.7 246 55.7
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.4e-60 237.3 168 70.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 7.0e-60 235.0 161 72.7
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.8e-56 223.0 152 73.7
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.3e-53 214.2 156 67.3
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 3.2e-52 209.5 260 48.5
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.1e-52 209.1 206 56.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.7e-48 195.7 258 47.3
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-46 190.3 268 44.8
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 8.3e-45 184.9 178 60.7
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.5e-35 152.9 95 73.7
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 4.6e-35 152.5 246 43.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 6.6e-34 148.7 254 40.6
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-31 141.0 170 48.8
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 9.9e-30 134.8 246 39.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 4.9e-29 132.5 159 52.2
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 6.4e-29 132.1 93 64.5
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 9.3e-28 128.3 135 47.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 7.8e-27 125.2 135 46.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.2e-19 101.3 80 60.0
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.3e-18 97.8 62 79.0
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 3.0e-18 96.7 57 71.9
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.5e-14 84.3 49 87.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.5e-12 75.9 78 51.3
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.3e-10 71.2 51 68.6


User provided reference genes

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