Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.4e-92 342.4 205 100.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.8e-85 318.9 206 89.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.4e-83 312.0 207 91.3
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.2e-59 233.8 208 71.6
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.6e-38 162.9 207 50.2
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.3e-38 162.5 206 57.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-37 160.6 218 49.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 4.8e-37 158.7 207 44.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 8.2e-37 157.9 208 48.6
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.2e-37 157.9 208 49.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.0e-35 153.3 211 53.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.5e-35 152.1 202 51.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.7e-35 151.4 207 49.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.0e-34 151.0 208 46.2
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.9e-34 149.4 207 52.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 5.0e-34 148.7 213 53.1
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.0e-34 148.7 207 53.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.5e-34 148.3 207 53.1
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-33 147.5 213 52.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-33 147.5 218 51.4
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-33 147.5 203 50.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.9e-33 146.7 209 45.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.9e-33 146.7 200 48.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.5e-33 146.4 221 51.6
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.5e-33 146.4 204 52.9
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.5e-33 146.4 204 52.9
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-33 146.4 200 53.5
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.5e-33 146.4 207 44.9
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.2e-33 146.0 220 51.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.5e-33 145.2 219 46.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 7.2e-33 144.8 219 50.2
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.4e-33 144.4 200 47.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 9.4e-33 144.4 206 48.5
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.2e-32 144.1 215 50.2
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.2e-32 144.1 214 51.9
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-32 143.7 199 49.2
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 2.1e-32 143.3 221 51.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 4.7e-32 142.1 205 55.6
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.7e-32 142.1 206 51.9
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.1e-32 141.7 211 56.9
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.0e-31 141.0 217 57.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-31 141.0 212 48.6
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.4e-31 140.6 216 55.1
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.8e-31 140.2 214 51.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 4.0e-31 139.0 205 52.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.0e-31 139.0 252 44.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 4.0e-31 139.0 236 44.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.2e-31 138.7 215 50.2
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 6.7e-31 138.3 208 51.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.2e-30 137.5 199 52.3
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.2e-30 137.5 207 50.2
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.5e-30 137.1 217 51.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 3.3e-30 136.0 207 48.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 7.5e-30 134.8 210 42.9
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.7e-30 134.4 234 44.0
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.2e-29 133.3 132 58.3
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.2e-29 133.3 208 49.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.2e-29 133.3 206 51.5
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.8e-29 132.9 204 52.9
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 4.8e-29 132.1 227 46.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 4.8e-29 132.1 227 46.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.8e-29 132.1 205 49.8
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 6.3e-29 131.7 225 54.7
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 8.2e-29 131.3 201 46.8
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 8.2e-29 131.3 196 44.9
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.1e-28 131.0 214 42.5
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-28 131.0 211 51.2
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.4e-28 130.6 189 48.1
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-28 130.6 219 53.9
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.8e-28 130.2 202 51.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.1e-28 129.4 211 50.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.1e-28 129.0 206 52.4
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 4.1e-28 129.0 212 50.0
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.3e-28 128.6 203 49.8
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 7.0e-28 128.3 210 49.0
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 9.1e-28 127.9 197 50.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 9.1e-28 127.9 219 44.3
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 9.1e-28 127.9 207 51.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 9.1e-28 127.9 201 58.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-27 127.5 210 50.0
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-27 127.5 210 49.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.0e-27 126.7 199 39.7
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.0e-27 126.7 198 45.5
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.7e-27 126.3 142 62.7
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.5e-27 125.9 207 46.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 4.5e-27 125.6 197 48.2
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-27 125.6 197 48.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-27 125.6 197 48.2
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 4.5e-27 125.6 197 48.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 5.9e-27 125.2 214 50.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 5.9e-27 125.2 214 50.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.7e-26 123.6 213 46.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.7e-26 123.6 201 41.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.7e-26 123.6 200 39.5
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.7e-26 123.6 142 60.6
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.2e-26 123.2 216 45.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.2e-26 123.2 222 46.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.2e-26 123.2 238 34.5
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.2e-26 123.2 221 41.6
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.8e-26 122.5 200 48.5
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.0e-26 122.1 199 48.2
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.5e-26 121.7 247 43.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 8.5e-26 121.3 202 53.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 8.5e-26 121.3 207 45.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.5e-25 120.6 222 41.4
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.9e-25 120.2 198 39.9
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.9e-25 120.2 197 45.7
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-25 119.0 198 38.4
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 4.2e-25 119.0 239 43.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 5.5e-25 118.6 224 46.4
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 7.2e-25 118.2 223 46.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 7.2e-25 118.2 192 40.6
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-24 117.1 201 47.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-24 116.3 195 40.0
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.7e-24 116.3 195 40.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.6e-24 115.9 210 45.7
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.6e-24 115.9 233 50.2
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 4.7e-24 115.5 220 47.3
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.1e-24 115.2 212 50.9
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 8.0e-24 114.8 159 54.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.0e-23 114.4 233 42.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.0e-23 114.4 220 35.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-23 112.8 192 40.1
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 4.0e-23 112.5 142 60.6
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.0e-23 112.5 204 39.7
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.2e-23 112.1 135 52.6
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 6.8e-23 111.7 209 39.7
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 6.8e-23 111.7 154 39.6
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.2e-22 110.9 156 55.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-22 110.9 227 46.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.2e-22 110.9 146 47.3
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.5e-22 110.5 197 44.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.5e-22 110.5 220 45.5
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.6e-22 109.8 201 53.2
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.4e-22 109.4 195 43.6
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 4.4e-22 109.0 220 45.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 7.5e-22 108.2 146 54.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 7.5e-22 108.2 219 36.1
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 9.8e-22 107.8 204 43.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-21 107.5 220 45.9
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.2e-21 106.7 207 35.7
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-21 106.3 136 46.3
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 4.8e-21 105.5 192 39.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-20 103.6 192 38.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 3.1e-20 102.8 189 41.8
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-20 102.8 192 39.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.1e-20 102.4 134 53.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 5.4e-20 102.1 132 50.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.4e-20 102.1 135 42.2
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 9.1e-20 101.3 195 37.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 9.1e-20 101.3 195 37.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 9.1e-20 101.3 195 37.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 3.5e-19 99.4 182 33.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-16 89.4 130 50.8
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-16 89.4 130 50.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-16 89.4 130 50.8
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.6e-16 89.4 130 50.0
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.0e-15 86.3 153 44.4
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.5e-14 84.0 139 40.3
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.4e-14 82.8 226 32.3
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.7e-13 80.5 114 44.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.7e-13 80.5 171 39.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 6.3e-13 78.6 208 41.3
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-12 77.4 208 40.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 7.0e-12 75.1 208 39.9
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-10 70.5 130 45.4
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.0e-10 68.9 129 32.6
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.3e-09 65.9 117 39.3
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.2e-08 64.3 129 31.0
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 2.1e-08 63.5 155 26.5
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.7e-08 62.4 203 25.1
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 6.1e-08 62.0 36 72.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 6.1e-08 62.0 38 65.8
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 8.0e-08 61.6 142 26.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.0e-07 61.2 42 59.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-07 60.8 117 41.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.0e-06 57.0 136 27.9
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 2.6e-06 56.6 154 26.6
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 2.6e-06 56.6 43 58.1
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 2.6e-06 56.6 52 51.9
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.4e-06 56.2 116 29.3
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.4e-06 56.2 129 31.0
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 4.4e-06 55.8 156 26.9
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 4.4e-06 55.8 150 27.3
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 5.7e-06 55.5 27 85.2
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 9.8e-06 54.7 52 48.1
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 9.8e-06 54.7 130 24.6
SEGI_03464 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.8e-06 54.7 130 29.2


User provided reference genes

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