Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 3.2e-81 305.1 156 100.0
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 4.9e-74 281.2 156 92.9
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 4.9e-74 281.2 156 92.9
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 6.2e-69 264.2 156 87.2
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 3.4e-51 205.3 145 69.7
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 6.4e-50 201.1 145 69.0
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 8.4e-50 200.7 145 71.0
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 2.4e-49 199.1 145 67.6
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 3.2e-49 198.7 146 68.5
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 7.1e-49 197.6 129 72.9
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 9.3e-49 197.2 150 66.7
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 2.7e-48 195.7 131 72.5
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 2.7e-48 195.7 143 66.4
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.3e-47 193.4 145 69.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.3e-47 193.4 150 63.3
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.8e-47 193.0 124 74.2
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 2.3e-47 192.6 124 74.2
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 5.1e-47 191.4 149 65.8
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.1e-46 190.3 154 62.3
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 1.5e-46 189.9 144 66.7
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 1.9e-46 189.5 145 66.9
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 5.6e-46 188.0 148 66.9
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 5.6e-46 188.0 151 61.6
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 7.4e-46 187.6 148 63.5
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.1e-45 186.0 155 61.9
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.1e-45 186.0 148 66.2
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 4.8e-45 184.9 138 68.1
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 6.2e-45 184.5 124 67.7
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 6.2e-45 184.5 129 69.8
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 6.2e-45 184.5 148 66.2
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 1.1e-44 183.7 149 62.4
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.4e-44 183.3 144 61.8
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 3.1e-44 182.2 133 65.4
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 4.0e-44 181.8 129 69.8
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 5.3e-44 181.4 147 62.6
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 6.9e-44 181.0 133 64.7
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 6.9e-44 181.0 144 60.4
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 9.0e-44 180.6 152 61.8
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 9.0e-44 180.6 152 61.8
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 1.5e-43 179.9 142 62.0
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 1.5e-43 179.9 129 68.2
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 2.0e-43 179.5 134 65.7
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.0e-43 179.5 133 66.9
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 2.6e-43 179.1 132 65.9
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 2.6e-43 179.1 126 67.5
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 4.5e-43 178.3 139 63.3
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 5.8e-43 177.9 133 63.9
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 5.8e-43 177.9 133 63.9
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 5.8e-43 177.9 133 63.9
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 5.8e-43 177.9 150 60.0
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 7.6e-43 177.6 132 64.4
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.3e-42 176.8 124 66.9
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.7e-42 176.4 120 68.3
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.7e-42 176.4 155 58.1
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.7e-42 176.4 146 58.2
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 2.2e-42 176.0 126 66.7
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.9e-42 175.6 127 69.3
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.9e-42 175.6 123 70.7
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 3.8e-42 175.3 115 73.9
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 3.8e-42 175.3 156 59.0
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 4.9e-42 174.9 126 67.5
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 4.9e-42 174.9 126 67.5
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 6.5e-42 174.5 145 63.4
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.1e-41 173.7 133 61.7
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.1e-41 173.7 123 69.9
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 1.4e-41 173.3 124 64.5
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 2.5e-41 172.6 126 66.7
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 9.3e-41 170.6 155 60.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.2e-40 170.2 132 61.4
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.2e-40 170.2 133 64.7
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 1.2e-40 170.2 123 69.1
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.2e-40 170.2 132 62.9
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 1.6e-40 169.9 144 59.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.1e-40 169.5 121 65.3
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.5e-40 168.7 124 62.9
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 4.6e-40 168.3 121 62.8
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 4.6e-40 168.3 130 63.1
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 7.9e-40 167.5 130 63.1
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 7.9e-40 167.5 161 56.5
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.3e-39 166.8 122 67.2
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.5e-38 163.3 120 65.0
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 2.5e-38 162.5 147 59.9
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 7.4e-38 161.0 153 57.5
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 9.7e-38 160.6 123 59.3
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 3.7e-37 158.7 120 60.0
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.4e-36 156.8 199 47.2
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.1e-36 155.6 105 69.5
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 5.3e-36 154.8 124 59.7
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.2e-35 153.7 152 52.6
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 7.7e-35 151.0 115 70.4
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 8.5e-34 147.5 104 70.2
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 1.4e-33 146.7 120 58.3
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 7.2e-33 144.4 112 65.2
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.1e-32 142.9 107 64.5
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.0e-31 140.6 158 51.9
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 1.4e-31 140.2 111 64.0
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 3.0e-31 139.0 120 53.3
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.1e-30 137.1 96 67.7
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.1e-30 137.1 106 60.4
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.0e-30 136.3 169 44.4
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 2.5e-30 136.0 94 72.3
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 8.2e-29 131.0 122 58.2
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 1.4e-28 130.2 122 50.0
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.4e-28 129.4 119 55.5
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 4.1e-28 128.6 93 71.0
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 6.9e-28 127.9 118 54.2
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.0e-27 126.3 118 53.4
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 2.2e-26 122.9 94 64.9
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 2.9e-26 122.5 92 70.7
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 5.0e-26 121.7 121 47.9
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 5.7e-22 108.2 94 58.5
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 9.7e-22 107.5 106 48.1
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 3.7e-21 105.5 125 50.4
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 2.2e-18 96.3 74 64.9
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.9e-18 95.9 69 68.1
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 8.5e-18 94.4 102 44.1
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 5.5e-17 91.7 124 39.5
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.1e-16 89.7 94 48.9
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 1.8e-12 76.6 122 36.9
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 3.1e-12 75.9 72 56.9
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 5.3e-12 75.1 111 33.3


User provided reference genes

Program Settings