Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G013070 Citrullus lanatus HOM05D006676 ORTHO05D008394 2.4e-88 328.9 179 100.0
CsaV3_2G017150 Cucumis sativus L. HOM05D006676 ORTHO05D008394 3.4e-79 298.5 179 89.9
MELO3C020918.2 Cucumis melo HOM05D006676 ORTHO05D008394 3.2e-77 292.0 180 88.3
Sed0003061 Sechium edule HOM05D006676 ORTHO05D008394 2.7e-76 288.9 179 86.0
Manes.13G131900 Manihot esculenta HOM05D006676 ORTHO05D008394 2.0e-55 219.5 179 68.2
Dinv26772 Davidia involucrata HOM05D006676 ORTHO05D008394 7.4e-50 201.1 180 63.9
CiPaw.01G028300 Carya illinoinensis HOM05D006676 ORTHO05D008394 9.7e-50 200.7 178 64.0
PGR102G2956 Punica granatum HOM05D006676 ORTHO05D008394 1.6e-49 199.9 177 63.8
Prupe.7G145000 Prunus persica HOM05D006676 ORTHO05D008394 6.9e-48 194.5 181 62.4
Ciclev10026596m.g Citrus clementina HOM05D006676 ORTHO05D008394 1.2e-47 193.7 174 60.9
QL06p044204 Quercus lobata HOM05D006676 ORTHO05D008394 1.2e-47 193.7 173 63.0
MD02G1159200 Malus domestica HOM05D006676 ORTHO05D008394 3.4e-47 192.2 180 61.7
TWI09G1529 Tripterygium wilfordii HOM05D006676 ORTHO05D008394 4.5e-47 191.8 182 63.7
COL.COLO4_22185 Corchorus olitorius HOM05D006676 ORTHO05D008394 1.7e-46 189.9 173 63.6
Potri.007G034600 Populus trichocarpa HOM05D006676 ORTHO05D008394 2.2e-46 189.5 185 61.1
Eucgr.H01944 Eucalyptus grandis HOM05D006676 ORTHO05D008394 2.9e-46 189.1 176 61.4
Hma1.2p1_0261F.1_g105020 Hydrangea macrophylla HOM05D006676 ORTHO05D008394 8.5e-46 187.6 181 61.3
Duzib187G2000 Durio zibethinus HOM05D006676 ORTHO05D008394 1.4e-45 186.8 178 64.0
Thecc.01G046000 Theobroma cacao HOM05D006676 ORTHO05D008394 1.4e-45 186.8 179 63.1
Nn6g32155 Nelumbo nucifera HOM05D006676 ORTHO05D008394 3.2e-45 185.7 179 59.8
Lj2g0022488 Lotus japonicus HOM05D006676 ORTHO05D008394 5.5e-45 184.9 180 58.9
Glyma.11G060600 Glycine max HOM05D006676 ORTHO05D008394 9.4e-45 184.1 180 59.4
Gohir.A02G161300 Gossypium hirsutum HOM05D006676 ORTHO05D008394 9.4e-45 184.1 178 61.2
Glyma.01G182300 Glycine max HOM05D006676 ORTHO05D008394 2.7e-44 182.6 180 58.9
Gorai.003G019600 Gossypium raimondii HOM05D006676 ORTHO05D008394 3.6e-44 182.2 178 59.6
TAR625G0739 Trochodendron aralioides HOM05D006676 ORTHO05D008394 3.6e-44 182.2 179 60.3
MD00G1067500 Malus domestica HOM05D006676 ORTHO05D008394 7.9e-44 181.0 179 57.5
arahy.Tifrunner.gnm1.ann1.TQQ6DV Arachis hypogaea HOM05D006676 ORTHO05D008394 1.0e-43 180.6 188 59.0
FAN23G1040 Fragaria x ananassa HOM05D006676 ORTHO05D008394 1.4e-43 180.3 180 58.9
Actinidia36526 Actinidia chinensis HOM05D006676 ORTHO05D008394 3.9e-43 178.7 178 59.6
Gohir.D03G019200 Gossypium hirsutum HOM05D006676 ORTHO05D008394 3.9e-43 178.7 178 59.6
Sabra07G0030200 Salix brachista HOM05D001814 ORTHO05D001845 5.1e-43 178.3 189 58.7
ECA232G0167 Erigeron canadensis HOM05D006676 ORTHO05D008394 1.5e-42 176.8 180 61.1
Lalb_Chr05g0213091 Lupinus albus HOM05D006676 ORTHO05D008394 1.5e-42 176.8 182 57.1
RcHm_v2.0_Chr2g0103301 Rosa chinensis HOM05D006676 ORTHO05D008394 4.3e-42 175.3 179 58.7
CANSAT01G0168 Cannabis sativa HOM05D006676 ORTHO05D008394 5.7e-42 174.9 180 59.4
arahy.Tifrunner.gnm1.ann1.A5DXZZ Arachis hypogaea HOM05D006676 ORTHO05D008394 1.7e-41 173.3 187 57.2
Sopen02g015580 Solanum pennellii HOM05D006676 ORTHO05D008394 2.8e-41 172.6 180 58.3
PSO675G6281 Papaver somniferum HOM05D006676 ORTHO05D008394 4.8e-41 171.8 179 53.6
FvH4_1g14550 Fragaria vesca HOM05D006676 ORTHO05D008394 6.3e-41 171.4 180 57.2
FAN19G1679 Fragaria x ananassa HOM05D006676 ORTHO05D008394 6.3e-41 171.4 180 57.2
MSTRG.15406 Avicennia marina HOM05D006676 ORTHO05D008394 1.8e-40 169.9 176 57.4
Actinidia12084 Actinidia chinensis HOM05D006676 ORTHO05D008394 4.1e-40 168.7 183 56.8
Cfa004230 Carpinus fangiana HOM05D006676 ORTHO05D008394 9.1e-40 167.5 247 43.3
Cc07_g05420 Coffea canephora HOM05D006676 ORTHO05D008394 1.2e-39 167.2 175 57.1
PSO541G6387 Papaver somniferum HOM05D006676 ORTHO05D008394 1.5e-39 166.8 179 53.1
Phvul.002G023300 Phaseolus vulgaris HOM05D006676 ORTHO05D008394 2.6e-39 166.0 180 53.9
FAN26G0249 Fragaria x ananassa HOM05D006676 ORTHO05D008394 4.5e-39 165.2 180 54.4
arahy.Tifrunner.gnm1.ann1.MI0500 Arachis hypogaea HOM05D006676 ORTHO05D008394 1.0e-38 164.1 190 55.8
VMungo1215G3052 Vigna mungo HOM05D006676 ORTHO05D008394 2.2e-38 162.9 180 54.4
Ca_24806_v3 Cicer arietinum L. HOM05D006676 ORTHO05D008394 1.4e-37 160.2 180 53.3
Oeu032926.1 Olea europaea HOM05D006676 ORTHO05D008394 2.5e-37 159.5 184 56.0
FAN28G2791 Fragaria x ananassa HOM05D006676 ORTHO05D008394 4.2e-37 158.7 180 52.8
Aqoxy6G00953 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 9.4e-37 157.5 185 52.4
Lj7A15T51 Lonicera japonica HOM05D006676 ORTHO05D008394 6.1e-36 154.8 181 55.8
EL10Ac6g14836 Beta vulgaris HOM05D006676 ORTHO05D008394 1.8e-35 153.3 182 53.3
Solyc02g065370.3 Solanum lycopersicum HOM05D006676 ORTHO05D008394 2.3e-35 152.9 180 54.4
AUR62027231 Chenopodium quinoa HOM05D006676 ORTHO05D008394 3.0e-35 152.5 175 55.4
Hund14112 Selenicereus undatus HOM05D006676 ORTHO05D008394 3.0e-35 152.5 182 53.3
Duzib147G0589 Durio zibethinus HOM05D006676 ORTHO05D008394 3.9e-35 152.1 177 53.7
HanXRQChr15g0489591 Helianthus annuus HOM05D006676 ORTHO05D008394 3.9e-35 152.1 175 55.4
CDE02G4077 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 4.4e-34 148.7 174 52.9
Nitab4.5_0000090g0080 Nicotiana tabacum HOM05D006676 ORTHO05D008394 1.3e-33 147.1 180 51.1
Psat2g163920 Pisum sativum HOM05D006676 ORTHO05D008394 1.7e-33 146.7 189 49.7
Nitab4.5_0002126g0070 Nicotiana tabacum HOM05D006676 ORTHO05D008394 8.2e-33 144.4 180 52.2
CAN.G93.2 Capsicum annuum HOM05D006676 ORTHO05D008394 1.1e-32 144.1 178 51.7
Rhsim08G0109100 Rhododendron simsii HOM05D006676 ORTHO05D008394 3.1e-32 142.5 276 39.1
Cpa.g.sc15.74 Carica papaya HOM05D006676 ORTHO05D008394 2.0e-31 139.8 137 55.5
Carub.0007s0328 Capsella rubella HOM05D006676 ORTHO05D008394 5.9e-31 138.3 189 48.1
Thhalv10026327m.g Eutrema salsugineum HOM05D006676 ORTHO05D008394 7.7e-31 137.9 184 49.5
PGSC0003DMG400002746 Solanum tuberosum HOM05D006676 ORTHO05D008394 6.5e-30 134.8 180 50.0
Sp7g34680 Schrenkiella parvula HOM05D006676 ORTHO05D008394 8.5e-30 134.4 186 48.9
Sc16g0001500 Simmondsia chinensis HOM05D006676 ORTHO05D008394 1.5e-29 133.7 183 48.1
HPP92_004789 Vanilla planifolia HOM05D006676 ORTHO05D008394 3.2e-29 132.5 217 43.8
AL7G13870 Arabidopsis lyrata HOM05D006676 ORTHO05D008394 7.2e-29 131.3 185 47.6
AT4G37090 Arabidopsis thaliana HOM05D006676 ORTHO05D008394 1.6e-28 130.2 183 47.5
TPR.G29856 Trifolium pratense HOM05D006676 ORTHO05D008394 2.1e-28 129.8 200 43.5
Medtr5g018550 Medicago truncatula HOM05D006676 ORTHO05D008394 1.8e-27 126.7 183 44.8
Zm00001eb206480 Zea mays HOM05D006676 ORTHO05D008394 2.3e-27 126.3 171 45.6
BraA01t00181Z Brassica rapa HOM05D006676 ORTHO05D008394 6.7e-27 124.8 176 48.9
BcaNung03502 Brassica carinata HOM05D006676 ORTHO05D008394 1.1e-26 124.0 174 47.1
CARHR245420 Cardamine hirsuta HOM05D006676 ORTHO05D008394 1.1e-26 124.0 186 44.6
MBI04_g03667_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 1.5e-26 123.6 153 49.0
Aa31LG6G13890 Aethionema arabicum HOM05D006676 ORTHO05D008394 2.6e-26 122.9 171 43.9
DCAR_025672 Daucus carota HOM05D006676 ORTHO05D008394 2.6e-26 122.9 142 52.1
BolC3t20221H Brassica oleracea HOM05D006676 ORTHO05D008394 4.4e-26 122.1 175 45.7
C01p02080 Brassica napus HOM05D006676 ORTHO05D008394 5.7e-26 121.7 174 47.1
BolC1t00200H Brassica oleracea HOM05D006676 ORTHO05D008394 5.7e-26 121.7 174 47.1
Dinv39914 Davidia involucrata HOM05D006676 ORTHO05D008394 7.4e-26 121.3 98 67.3
A01p01920 Brassica napus HOM05D006676 ORTHO05D008394 1.3e-25 120.6 177 46.9
BcaC01g00433 Brassica carinata HOM05D006676 ORTHO05D008394 4.8e-25 118.6 175 44.6
C03p79700 Brassica napus HOM05D006676 ORTHO05D008394 4.8e-25 118.6 175 44.6
AUR62003241 Chenopodium quinoa HOM05D006676 ORTHO05D008394 4.8e-25 118.6 175 45.7
Os02g0186700 Oryza sativa ssp. japonica HOM05D006676 ORTHO05D008394 6.3e-25 118.2 183 44.3
unitig_749.g13556 Utricularia gibba HOM05D006676 ORTHO05D008394 2.4e-24 116.3 161 46.0
vmacro17885 Vaccinium macrocarpon HOM05D006676 ORTHO05D008394 3.1e-24 115.9 234 41.5
Migut.K00838 Erythranthe guttata HOM05D006676 ORTHO05D008394 7.7e-23 111.3 182 45.1
SGA_v2.0_scaffold1G00184 Striga asiatica HOM05D006676 ORTHO05D008394 2.2e-22 109.8 127 56.7
SGA_v2.0_scaffold175G39367 Striga asiatica HOM05D006676 ORTHO05D008394 6.5e-22 108.2 141 51.1
Peaxi162Scf00019g02117 Petunia axillaris HOM05D006676 ORTHO05D008394 8.5e-22 107.8 175 41.7
Ah.02g126080 Amaranthus hybridus HOM05D006676 ORTHO05D008394 1.5e-21 107.1 147 47.6
BraA08t34206Z Brassica rapa HOM05D006676 ORTHO05D008394 9.4e-21 104.4 178 43.8
A08p22510 Brassica napus HOM05D006676 ORTHO05D008394 3.4e-18 95.9 178 42.1
GSVIVG01005096001 Vitis vinifera HOM05D006676 ORTHO05D008394 1.7e-17 93.6 98 54.1
GSVIVG01004606001 Vitis vinifera HOM05D006676 ORTHO05D008394 2.2e-17 93.2 98 53.1
Aqoxy2G03321 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 2.8e-17 92.8 138 48.6
Aqoxy6G00951 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 2.8e-17 92.8 138 48.6
Haze_15170 Corylus avellana HOM05D006676 ORTHO05D008394 5.9e-15 85.1 184 34.2
THA.LOC104819832 Tarenaya hassleriana HOM05D006676 ORTHO05D008394 1.0e-14 84.3 182 38.5
MBI15_g03557_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 3.8e-14 82.4 80 58.8
Sc16g0001490 Simmondsia chinensis HOM05D006676 ORTHO05D008394 5.0e-14 82.0 80 55.0
arahy.Tifrunner.gnm1.ann1.9JJG5X Arachis hypogaea HOM05D006676 ORTHO05D008394 1.4e-11 73.9 126 44.4
ATR0800G049 Amborella trichopoda HOM05D006676 ORTHO05D008394 5.7e-10 68.6 85 49.4
BcaB03g12363 Brassica carinata HOM05D006676 ORTHO05D008394 2.4e-08 63.2 62 53.2
CDE01G0251 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 4.1e-08 62.4 71 49.3
BcaB03g12365 Brassica carinata HOM05D006676 ORTHO05D008394 3.8e-06 55.8 56 50.0


User provided reference genes

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