Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.4e-112 408.3 202 100.0
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 2.2e-82 309.3 203 76.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 7.0e-65 251.1 205 64.9
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 4.4e-51 205.3 201 53.7
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-49 200.7 201 52.2
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-49 200.7 201 52.2
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.4e-49 199.5 205 52.7
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.4e-49 199.5 205 52.7
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.1e-49 198.7 200 51.5
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 9.2e-49 197.6 210 51.9
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.2e-48 197.2 205 52.2
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.2e-48 197.2 205 52.2
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-48 196.8 205 52.2
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 6.6e-47 191.4 202 51.5
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 5.6e-46 188.3 216 51.4
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 5.6e-46 188.3 135 75.6
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 9.6e-46 187.6 199 51.8
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-45 186.8 201 50.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.6e-45 185.7 203 51.2
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 4.7e-45 185.3 207 52.2
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.2e-44 181.8 208 46.6
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.0e-43 179.9 194 51.0
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.4e-43 179.1 212 53.8
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.4e-43 179.1 207 48.8
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-42 177.2 207 49.3
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.2e-42 176.4 207 48.3
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.2e-42 176.4 206 48.5
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.9e-42 176.0 207 47.8
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.4e-42 174.9 202 49.5
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.4e-42 174.9 206 46.6
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-41 174.1 205 45.4
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.4e-41 173.7 207 47.8
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.9e-41 173.3 208 47.1
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.4e-41 172.9 207 47.8
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 4.2e-41 172.2 202 48.0
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 4.2e-41 172.2 203 45.8
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 5.4e-41 171.8 203 47.3
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-40 170.6 215 46.5
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.6e-40 170.2 207 50.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 2.1e-40 169.9 195 49.7
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 2.1e-40 169.9 199 46.7
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.7e-40 169.5 214 44.4
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.7e-40 169.5 205 46.8
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 6.0e-40 168.3 215 48.4
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.8e-40 167.9 201 48.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.0e-39 167.5 206 45.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-39 167.2 180 48.3
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.3e-39 166.4 201 47.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.3e-39 166.4 198 49.0
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.3e-39 166.4 187 49.2
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 5.1e-39 165.2 197 47.7
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 2.5e-38 162.9 161 54.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.3e-38 161.4 215 43.7
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 7.3e-38 161.4 206 45.1
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.6e-37 160.2 215 44.2
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.4e-36 156.4 214 42.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 2.4e-36 156.4 203 47.3
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.1e-36 156.0 213 43.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 2.6e-35 152.9 235 42.1
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.8e-35 151.8 178 46.1
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.9e-34 149.4 201 43.8
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 6.4e-34 148.3 238 40.3
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 6.4e-34 148.3 238 40.3
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.4e-34 147.9 187 44.9
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.4e-33 147.1 197 40.6
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 3.2e-33 146.0 195 40.0
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 3.2e-33 146.0 195 40.0
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 3.2e-33 146.0 206 40.8
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 4.2e-33 145.6 200 37.0
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 4.2e-33 145.6 208 41.3
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 4.2e-33 145.6 209 41.1
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-33 145.2 197 40.1
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 9.3e-33 144.4 193 44.0
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.6e-32 143.7 212 44.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.6e-32 143.7 212 44.3
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.1e-32 143.3 201 45.3
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.1e-32 143.3 205 40.5
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.5e-32 142.5 204 42.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 3.5e-32 142.5 202 42.6
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.0e-31 141.0 192 40.1
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-31 141.0 208 39.9
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-31 139.8 202 40.1
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.0e-31 139.4 204 44.6
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 5.1e-31 138.7 208 40.4
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 6.6e-31 138.3 204 39.2
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 6.6e-31 138.3 198 44.4
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.1e-30 137.5 201 41.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.5e-30 137.1 144 51.4
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.9e-30 136.7 202 42.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.5e-30 136.3 198 39.9
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.3e-30 136.0 167 45.5
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.3e-30 135.6 204 39.2
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.3e-30 135.6 204 39.2
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 4.3e-30 135.6 208 40.4
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 4.3e-30 135.6 209 39.2
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 5.6e-30 135.2 210 38.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 7.3e-30 134.8 204 38.7
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.1e-29 133.3 199 39.2
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.8e-29 132.9 204 38.7
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 3.6e-29 132.5 207 38.6
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 3.6e-29 132.5 207 38.6
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 3.6e-29 132.5 207 38.6
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.6e-29 132.5 211 38.9
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.6e-29 132.5 206 40.8
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.6e-29 132.5 208 38.9
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 3.6e-29 132.5 200 40.0
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 4.8e-29 132.1 191 39.8
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 6.2e-29 131.7 199 37.7
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 8.1e-29 131.3 170 44.7
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.1e-29 131.3 199 35.7
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 8.1e-29 131.3 200 39.5
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 8.1e-29 131.3 206 39.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.8e-28 130.2 208 40.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-28 130.2 199 39.7
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.1e-28 129.4 208 35.1
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 3.1e-28 129.4 210 38.1
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.1e-28 129.4 197 37.6
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 4.0e-28 129.0 208 39.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 4.0e-28 129.0 203 37.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.3e-28 128.6 199 35.2
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 6.9e-28 128.3 205 38.0
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 6.9e-28 128.3 208 39.4
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 9.0e-28 127.9 206 37.9
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.2e-27 127.5 193 39.9
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-27 126.7 197 35.0
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 2.0e-27 126.7 197 41.1
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.6e-27 126.3 199 34.7
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.4e-27 125.9 200 39.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 7.6e-27 124.8 207 40.6
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 9.9e-27 124.4 201 39.8
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 9.9e-27 124.4 197 35.0
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-26 124.0 109 56.9
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.7e-26 123.6 199 37.7
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.9e-26 122.9 205 38.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 8.4e-26 121.3 206 35.4
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 8.4e-26 121.3 197 35.5
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 8.4e-26 121.3 203 35.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-25 120.9 199 36.2
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-25 120.9 199 36.2
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.9e-25 120.2 200 39.5
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.9e-25 120.2 204 38.7
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.4e-25 119.8 194 37.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 3.2e-25 119.4 197 35.0
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 4.2e-25 119.0 197 36.5
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 4.2e-25 119.0 197 34.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 5.4e-25 118.6 205 36.6
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 7.1e-25 118.2 208 35.1
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 7.1e-25 118.2 197 36.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 7.1e-25 118.2 208 34.6
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 9.3e-25 117.9 207 41.5
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.5e-24 115.9 197 34.5
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.0e-23 114.4 204 35.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.3e-23 114.0 170 37.6
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.3e-23 114.0 206 35.0
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-23 113.6 198 34.8
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 3.0e-23 112.8 199 37.2
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 5.1e-23 112.1 207 35.7
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 8.7e-23 111.3 196 35.7
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 1.5e-22 110.5 176 37.5
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 209 35.4
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.5e-22 109.8 197 33.0
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.3e-22 109.4 211 35.1
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 4.3e-22 109.0 217 38.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 5.6e-22 108.6 209 36.8
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 6.2e-21 105.1 173 36.4
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.1e-20 104.4 216 33.3
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.9e-20 101.7 144 40.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.5e-19 100.5 140 42.1
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.0e-19 100.1 127 39.4
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 142 42.3
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 2.9e-18 96.3 169 36.1
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 4.9e-18 95.5 80 57.5
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.9e-18 95.5 140 41.4
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.5e-18 95.1 164 36.6
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 6.5e-18 95.1 140 42.1
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 4.2e-17 92.4 193 33.2
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 7.1e-17 91.7 104 45.2
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.6e-16 90.5 142 42.3
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 7.9e-16 88.2 204 33.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.0e-15 86.3 142 40.1
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 3.3e-14 82.8 131 39.7
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 7.4e-14 81.6 93 46.2
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.6e-13 80.5 145 35.2
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.5e-11 73.9 190 28.9
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.7e-10 70.5 139 33.1
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.7e-10 70.5 133 36.8
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 4.3e-06 55.8 137 28.5


User provided reference genes

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