Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.4e-102 376.3 189 100.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 5.1e-25 118.6 196 37.2
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.5e-24 117.1 195 36.9
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 3.7e-23 112.5 136 42.6
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 7.6e-21 104.8 136 42.6
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 7.6e-21 104.8 139 42.4
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 2.9e-20 102.8 175 34.3
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 3.8e-20 102.4 134 41.8
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 1.4e-19 100.5 199 36.2
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.9e-19 100.1 152 40.1
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 3.2e-19 99.4 162 38.3
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 4.2e-19 99.0 133 45.1
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.6e-18 97.1 189 32.3
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 2.7e-18 96.3 215 35.8
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.7e-18 96.3 189 33.3
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 2.7e-18 96.3 140 40.7
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 3.5e-18 95.9 191 32.5
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 7.9e-18 94.7 135 37.0
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 3.0e-17 92.8 70 57.1
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 3.9e-17 92.4 151 35.8
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 5.1e-17 92.0 102 47.1
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 6.7e-17 91.7 195 32.8
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 1.6e-15 87.0 189 33.3
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.8e-15 86.3 137 38.0
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 3.7e-15 85.9 201 35.3
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 6.2e-15 85.1 169 34.3
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 8.2e-15 84.7 134 37.3
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.1e-14 84.3 148 34.5
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 1.4e-14 84.0 190 33.7
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 2.4e-14 83.2 65 53.8
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 3.1e-14 82.8 145 38.6
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.1e-14 82.8 149 33.6
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 4.0e-14 82.4 142 39.4
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 4.0e-14 82.4 136 35.3
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 5.3e-14 82.0 151 33.1
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 5.3e-14 82.0 131 32.8
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 6.9e-14 81.6 151 33.1
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 9.0e-14 81.3 149 33.6
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 9.0e-14 81.3 140 33.6
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 9.0e-14 81.3 132 34.8
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 1.2e-13 80.9 142 38.7
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 1.2e-13 80.9 142 38.7
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 1.2e-13 80.9 131 36.6
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 1.5e-13 80.5 164 33.5
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 1.5e-13 80.5 181 33.7
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 2.0e-13 80.1 131 32.8
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 2.0e-13 80.1 92 45.7
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 3.4e-13 79.3 141 36.9
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 4.5e-13 79.0 156 37.8
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 4.5e-13 79.0 156 37.8
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 4.5e-13 79.0 202 30.2
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 5.8e-13 78.6 187 31.0
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 7.6e-13 78.2 181 33.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 7.6e-13 78.2 132 34.1
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 1.0e-12 77.8 208 33.7
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 1.0e-12 77.8 196 31.1
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 1.0e-12 77.8 135 35.6
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 1.0e-12 77.8 136 36.8
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 1.0e-12 77.8 115 35.7
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 1.7e-12 77.0 136 39.7
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 2.2e-12 76.6 75 41.3
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 2.2e-12 76.6 147 32.7
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 2.2e-12 76.6 128 35.9
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 3.8e-12 75.9 186 33.9
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 3.8e-12 75.9 64 51.6
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 3.8e-12 75.9 142 37.3
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 4.9e-12 75.5 141 33.3
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 4.9e-12 75.5 137 38.0
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 4.9e-12 75.5 203 29.6
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 8.4e-12 74.7 186 33.9
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 8.4e-12 74.7 186 33.9
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 1.9e-11 73.6 82 42.7
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 2.5e-11 73.2 183 30.6
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 2.5e-11 73.2 91 42.9
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 5.5e-11 72.0 131 32.1
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 5.5e-11 72.0 134 34.3
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 2.7e-10 69.7 168 31.0
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 2.7e-10 69.7 196 26.5
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.7e-10 69.7 128 29.7
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 3.5e-10 69.3 102 38.2
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 3.5e-10 69.3 135 34.1
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.5e-10 69.3 99 38.4
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 4.6e-10 68.9 132 36.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.0e-09 67.8 173 26.0
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 1.0e-09 67.8 135 32.6
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 1.0e-09 67.8 105 35.2
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 5.1e-09 65.5 78 41.0
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 6.7e-09 65.1 121 38.8
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 6.7e-09 65.1 149 28.9
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 8.7e-09 64.7 134 30.6
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.1e-08 64.3 133 31.6
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 1.1e-08 64.3 118 39.8
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 1.1e-08 64.3 118 39.8
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 1.1e-08 64.3 65 44.6
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 1.1e-08 64.3 65 44.6
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.1e-08 64.3 128 29.7
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.5e-08 63.9 67 43.3
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.5e-08 63.9 63 44.4
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-08 63.5 132 34.1
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.5e-08 63.2 65 43.1
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.5e-08 63.2 152 29.6
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 2.5e-08 63.2 132 34.1
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 2.5e-08 63.2 112 35.7
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 3.3e-08 62.8 72 43.1
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.3e-08 62.4 174 28.2
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 7.4e-08 61.6 121 37.2
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 7.4e-08 61.6 121 37.2
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 7.4e-08 61.6 63 49.2
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 7.4e-08 61.6 137 32.1
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 9.7e-08 61.2 181 28.7
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 9.7e-08 61.2 88 39.8
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 1.3e-07 60.8 105 33.3
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 1.3e-07 60.8 66 45.5
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 1.6e-07 60.5 63 41.3
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.6e-07 60.5 165 30.3
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 2.2e-07 60.1 67 41.8
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 2.2e-07 60.1 79 38.0
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.8e-07 59.7 67 34.3
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 3.7e-07 59.3 84 39.3
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 3.7e-07 59.3 66 40.9
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 4.8e-07 58.9 161 31.7
SGA_v2.0_scaffold95G28750 Striga asiatica HOM05D007511 ORTHO05D003753 4.8e-07 58.9 92 37.0
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 6.3e-07 58.5 63 44.4
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 6.3e-07 58.5 63 46.0
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 6.3e-07 58.5 113 36.3
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 8.2e-07 58.2 66 47.0
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 8.2e-07 58.2 66 42.4
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 8.2e-07 58.2 145 30.3
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 1.1e-06 57.8 66 40.9
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 1.4e-06 57.4 67 38.8
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.4e-06 57.4 67 38.8
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.8e-06 57.0 166 30.1
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.8e-06 57.0 119 35.3
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 2.4e-06 56.6 59 42.4
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 3.1e-06 56.2 83 34.9
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 3.1e-06 56.2 75 38.7
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.1e-06 56.2 119 33.6
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 3.1e-06 56.2 63 44.4
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 3.1e-06 56.2 71 39.4
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 5.3e-06 55.5 63 42.9
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 6.9e-06 55.1 146 28.1
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 9.0e-06 54.7 166 27.7
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 9.0e-06 54.7 81 34.6
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 9.0e-06 54.7 66 37.9


User provided reference genes

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