Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 4.9e-241 837.4 427 100.0
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 6.9e-195 684.1 424 79.7
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.1e-184 650.2 434 76.0
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 6.0e-183 644.4 425 76.2
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 3.9e-182 641.7 416 76.0
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 1.1e-181 640.2 430 73.7
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 5.6e-181 637.9 431 75.9
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.6e-180 636.3 428 74.5
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.1e-180 636.0 417 76.3
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 4.8e-180 634.8 412 77.2
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 8.2e-180 634.0 409 78.0
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 2.4e-179 632.5 433 73.0
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 9.0e-179 630.6 423 74.2
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.5e-178 629.8 433 72.7
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 3.4e-178 628.6 433 73.2
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 5.8e-178 627.9 409 77.3
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 8.4e-177 624.0 440 71.4
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.9e-176 622.9 409 75.1
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.5e-176 621.3 402 75.9
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 7.1e-176 620.9 420 73.3
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 1.2e-175 620.2 439 72.4
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.1e-175 619.4 406 75.4
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 2.1e-175 619.4 419 74.0
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 4.6e-175 618.2 417 73.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 1.3e-174 616.7 418 72.0
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.0e-174 615.5 422 73.2
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 8.7e-174 614.0 417 74.1
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.1e-173 613.6 410 74.1
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 1.1e-173 613.6 417 73.4
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.5e-173 613.2 414 73.9
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.5e-173 613.2 425 72.5
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.9e-173 612.8 418 73.2
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 2.5e-173 612.5 428 71.7
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 5.7e-173 611.3 430 72.3
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 7.4e-173 610.9 410 72.9
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 7.4e-173 610.9 410 74.6
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.3e-172 610.1 417 72.9
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 8.2e-172 607.4 423 71.2
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.1e-171 607.1 410 72.9
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 2.4e-171 605.9 416 72.1
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 1.5e-170 603.2 427 71.2
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.3e-169 600.1 417 71.2
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.9e-169 599.0 394 74.6
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 5.0e-169 598.2 416 71.9
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.5e-169 597.8 427 70.7
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 8.5e-169 597.4 410 70.7
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.5e-169 597.4 408 72.5
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.1e-168 597.0 416 71.2
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 5.5e-168 594.7 410 71.0
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 1.2e-167 593.6 416 71.6
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.2e-167 593.6 407 73.5
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.6e-167 593.2 432 67.6
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 2.1e-167 592.8 398 73.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 2.7e-167 592.4 427 69.1
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 2.7e-167 592.4 406 70.9
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 2.7e-167 592.4 406 70.7
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 7.9e-167 590.9 434 67.5
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.8e-166 589.7 396 73.0
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.3e-166 589.3 436 68.1
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 2.3e-166 589.3 370 78.1
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.1e-165 587.0 407 73.2
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 5.7e-165 584.7 420 69.5
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 2.8e-164 582.4 414 71.0
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.8e-164 582.4 407 72.7
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.8e-163 579.7 428 68.2
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 3.1e-163 578.9 389 72.8
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.4e-162 575.5 400 71.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 5.9e-162 574.7 410 69.3
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 1.0e-161 573.9 415 69.4
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.0e-161 573.9 396 72.2
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 2.2e-161 572.8 418 69.4
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 5.0e-161 571.6 403 70.7
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.1e-160 570.5 386 73.3
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 5.5e-160 568.2 398 70.6
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 6.1e-159 564.7 447 65.3
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.3e-158 562.8 418 67.5
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 5.7e-157 558.1 483 60.2
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 9.7e-157 557.4 405 67.7
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.3e-156 557.0 406 67.5
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.2e-156 556.2 428 64.7
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 4.8e-156 555.1 519 57.8
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 4.5e-154 548.5 405 68.6
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 5.9e-154 548.1 380 69.2
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 2.2e-153 546.2 431 65.4
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 2.2e-153 546.2 408 68.6
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 2.2e-153 546.2 408 68.6
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.2e-152 542.0 398 67.3
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 2.2e-148 529.6 372 72.0
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 2.4e-147 526.2 340 79.1
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.2e-146 523.9 371 72.0
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.2e-143 513.8 369 72.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 4.0e-142 508.8 412 62.4
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 5.7e-141 505.0 408 62.3
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 3.2e-136 489.2 320 75.6
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 3.4e-133 479.2 401 60.6
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 1.6e-127 460.3 391 59.3
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 4.4e-125 452.2 315 71.1
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.4e-123 447.2 417 57.1
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.8e-118 430.3 416 56.7
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 6.6e-113 411.8 299 66.9
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 8.6e-113 411.4 398 57.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.9e-107 393.7 316 67.4
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.9e-107 393.7 399 54.4
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.7e-100 370.5 252 74.6
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.4e-100 368.6 335 63.0
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 6.8e-94 348.6 383 49.1
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 6.4e-84 315.5 214 70.1
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.3e-80 303.1 203 76.4
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 3.1e-78 296.6 201 76.1
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.5e-77 294.3 378 46.6
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.0e-65 255.0 383 39.4
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.9e-49 199.9 144 70.1
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.1e-49 199.5 120 80.0
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.9e-45 186.0 111 80.2
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.8e-41 172.2 128 68.8
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.3e-39 168.3 128 68.0
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.4e-38 164.9 128 66.4
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-35 154.1 104 77.9
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 2.0e-32 144.4 103 66.0
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 7.0e-30 136.0 103 68.9
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.0e-29 134.4 103 68.0
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 3.6e-26 123.6 76 78.9
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.7e-26 123.2 84 67.9
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 3.4e-24 117.1 94 67.0
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.1e-22 112.1 75 64.0
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.6e-21 108.2 86 59.3
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.0e-20 105.5 126 51.6
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 5.5e-19 99.8 128 50.0
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 3.0e-17 94.0 49 85.7
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.6e-16 90.9 236 38.1
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 5.4e-14 83.2 51 78.4
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 7.7e-13 79.3 43 79.1
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.1e-10 71.2 41 78.0


User provided reference genes

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