Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-113 412.9 198 100.0
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-113 412.9 198 100.0
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-113 412.9 198 100.0
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-113 412.9 198 100.0
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-113 412.9 198 100.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.1e-86 323.6 214 72.9
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.2e-85 320.1 213 73.7
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.0e-84 315.5 271 60.1
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.0e-84 315.5 271 60.1
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.6e-83 310.5 271 60.1
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.6e-83 310.5 271 60.1
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-82 309.7 271 60.1
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.8e-82 308.1 274 58.8
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 3.1e-81 305.4 239 65.3
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 9.0e-81 303.9 259 61.0
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 9.0e-81 303.9 254 62.6
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.4e-78 296.6 273 57.1
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 6.0e-77 291.2 261 59.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 6.0e-77 291.2 261 59.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 6.0e-77 291.2 261 59.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 6.0e-77 291.2 261 59.0
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.0e-77 291.2 271 56.8
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.0e-76 290.4 273 56.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.7e-76 289.7 261 58.6
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.0e-76 288.9 276 56.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 5.1e-76 288.1 276 55.4
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.1e-76 288.1 196 72.4
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 8.7e-76 287.3 260 56.5
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-75 285.4 198 75.8
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 9.6e-75 283.9 275 55.3
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 2.1e-74 282.7 276 55.1
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 2.1e-74 282.7 276 55.1
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-74 281.2 273 54.6
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-74 281.2 273 54.6
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-74 281.2 273 54.6
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-74 281.2 273 54.6
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 2.4e-73 279.3 276 54.7
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 2.4e-73 279.3 276 54.7
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 2.4e-73 279.3 276 54.7
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 2.4e-73 279.3 276 54.7
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-72 276.9 276 54.3
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 5.8e-72 274.6 276 54.3
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 3.8e-71 271.9 276 53.6
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 4.6e-69 265.0 210 62.9
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 7.4e-67 257.7 273 53.1
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-63 245.0 240 54.2
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 6.5e-63 244.6 273 49.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.1e-60 235.0 236 53.0
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 5.7e-59 231.5 254 51.2
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 5.7e-59 231.5 250 51.2
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.3e-58 230.3 237 51.1
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 5.9e-56 221.5 203 57.6
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.2e-55 219.5 246 50.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.5e-53 212.2 254 47.6
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-51 206.8 104 90.4
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.5e-51 206.8 156 66.7
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 2.5e-51 206.1 224 50.9
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 9.7e-51 204.1 118 81.4
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.8e-49 199.9 192 53.6
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-48 197.2 200 54.0
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-48 196.8 224 48.7
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-48 196.4 105 84.8
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.4e-48 195.7 101 90.1
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 4.5e-48 195.3 105 83.8
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.0e-47 191.8 131 71.0
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-46 189.9 101 88.1
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.9e-46 189.9 131 70.2
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.6e-45 186.8 104 82.7
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.6e-45 185.3 105 80.0
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 4.3e-43 178.7 97 83.5
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 4.3e-43 178.7 97 83.5
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 7.4e-43 177.9 90 90.0
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 7.4e-43 177.9 90 90.0
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.6e-40 169.5 104 75.0
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 5.0e-39 165.2 80 91.2
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 3.2e-38 162.5 81 88.9
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 6.1e-37 158.3 284 31.7
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.1e-35 154.1 76 88.2
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.1e-35 154.1 299 32.8
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.3e-35 152.5 76 88.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.2e-32 144.1 80 81.2
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.9e-32 141.7 139 54.7
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-32 141.7 73 83.6
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 7.7e-32 141.4 78 82.1
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 7.7e-32 141.4 91 75.8
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 2.2e-31 139.8 91 74.7
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 4.7e-29 132.1 129 54.3
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 8.8e-28 127.9 88 73.9
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.6e-27 126.3 64 85.9
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.6e-27 126.3 179 41.9
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.7e-27 125.2 118 55.1
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-26 123.6 91 67.0
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 8.2e-26 121.3 91 65.9
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 1.8e-25 120.2 80 68.8
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-25 119.8 128 50.8
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.1e-25 119.0 60 88.3
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 7.0e-25 118.2 263 35.4
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-24 117.1 60 86.7
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.5e-24 115.9 62 82.3
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.5e-24 115.9 88 68.2
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.7e-23 113.6 60 83.3
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 6.5e-23 111.7 84 66.7
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.1e-22 110.9 144 49.3
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.6e-21 105.9 56 80.4
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.6e-21 105.9 57 84.2
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.3e-20 103.2 52 88.5
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.4e-19 99.4 52 84.6
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 8.3e-18 94.7 45 88.9
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.1e-17 94.4 47 85.1
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-17 92.0 46 84.8
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-16 90.9 50 84.0
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-16 90.5 53 73.6
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 2.2e-15 86.7 102 51.0
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.0e-15 85.5 68 66.2
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.7e-13 79.7 42 85.7
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 4.7e-13 79.0 60 66.7
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 8.8e-12 74.7 51 64.7
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-10 70.9 37 86.5
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 8.3e-10 68.2 48 64.6
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 4.1e-09 65.9 53 58.5
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.7e-08 63.2 44 70.5
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-07 58.9 59 50.8
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.0e-07 58.9 56 60.7
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.1e-06 57.8 35 77.1
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.5e-06 57.4 35 74.3
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.5e-06 56.6 43 62.8
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.6e-06 55.5 35 74.3
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 5.6e-06 55.5 23 91.3


User provided reference genes

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