Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 2698.7 1425 100.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1327.0 1478 57.4
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1312.4 1484 56.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1287.3 1512 54.9
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1284.2 1512 54.4
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1276.5 1489 55.4
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1275.8 1459 55.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1273.8 1459 55.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1273.1 1489 55.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1258.8 1486 55.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1258.8 1549 53.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1258.8 1489 55.1
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1243.0 1511 53.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 1217.6 1462 53.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1212.2 1432 53.6
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1194.9 1436 53.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1143.3 1502 51.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1129.4 1342 52.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1107.4 1502 51.5
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1102.8 1467 51.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1098.6 1448 52.3
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1090.5 1525 50.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1078.9 1371 51.1
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 8.5e-298 1027.7 1487 48.2
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.5e-294 1016.9 1468 47.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.5e-294 1016.1 1473 48.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.3e-293 1013.8 1475 47.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.6e-291 1006.1 1477 47.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.9e-290 1002.7 1451 48.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.3e-287 993.0 1472 46.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 1.7e-282 976.9 1382 47.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.1e-281 974.2 1458 47.1
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.1e-281 974.2 1420 47.7
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.4e-281 973.8 1342 48.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 4.7e-280 968.8 1318 48.3
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.8e-279 966.8 1462 47.1
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.0e-276 954.9 1351 48.9
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.5e-273 945.3 1475 46.4
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.4e-271 940.6 1463 45.0
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 4.0e-271 939.1 1316 47.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.2e-269 933.3 1474 46.7
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.8e-269 932.9 1226 51.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.8e-268 930.2 1206 51.3
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.1e-268 929.5 1500 45.0
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.3e-266 924.1 1221 50.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.4e-262 909.1 1228 50.2
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.8e-260 903.7 1323 47.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-256 891.0 1274 49.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.5e-254 884.0 1440 44.5
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.5e-251 872.5 1434 44.3
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.9e-249 867.1 1448 44.5
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.9e-249 867.1 1370 45.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 4.7e-248 862.4 1438 43.9
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 6.8e-247 858.6 1377 45.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 9.8e-246 854.7 1320 46.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 2.9e-245 853.2 1416 43.2
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.7e-242 844.0 995 51.9
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.8e-239 832.0 1317 46.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.2e-237 827.0 1448 43.5
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.0e-236 822.0 1285 45.2
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 2.1e-235 820.5 1436 43.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 8.9e-231 805.1 1328 44.7
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-230 804.3 1314 44.3
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 3.7e-229 799.7 1414 42.5
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 4.6e-227 792.7 1442 41.5
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.0e-226 791.6 1461 42.7
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 7.3e-225 785.4 1450 40.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.4e-223 780.4 1493 42.3
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.8e-221 773.1 1325 42.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.8e-219 765.4 1311 43.1
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.9e-218 763.1 767 59.7
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.6e-214 750.4 657 68.2
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 9.3e-212 741.9 1288 43.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 7.3e-209 732.3 1383 40.8
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.3e-207 726.1 1431 39.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.1e-201 708.4 1387 39.3
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 8.1e-200 702.2 1250 42.6
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.5e-198 698.0 1285 41.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.8e-191 674.5 1403 39.3
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 2.4e-191 674.1 1521 37.4
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.4e-191 674.1 1406 39.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.9e-189 666.4 1397 39.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 9.3e-188 662.1 1309 40.0
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 4.6e-187 659.8 1401 40.7
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 6.0e-187 659.4 1394 39.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 5.1e-186 656.4 1241 43.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.6e-184 651.4 1403 38.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.8e-184 649.8 1185 42.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.1e-177 628.6 1378 39.6
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.7e-176 624.8 1448 38.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.5e-174 618.2 1425 37.6
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 6.7e-170 602.8 1335 38.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 6.7e-170 602.8 1319 38.4
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 6.7e-170 602.8 1319 38.4
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.5e-169 601.7 1332 37.8
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 4.4e-169 600.1 1422 37.5
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.1e-164 585.5 1260 38.1
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.5e-156 558.5 905 43.5
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-156 558.1 874 43.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.5e-156 557.8 1273 37.9
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.6e-150 538.5 660 51.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.0e-146 525.8 1214 37.2
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.8e-138 496.5 616 51.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.3e-132 477.2 675 52.0
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.4e-111 409.1 1397 32.4
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.1e-110 405.2 836 38.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.5e-108 398.3 941 35.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.4e-95 354.0 644 42.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-95 353.6 523 47.4
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.2e-94 352.8 539 46.2
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.6e-94 352.4 480 46.2
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-91 342.8 331 58.0
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.5e-89 335.9 415 53.7
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.1e-87 329.7 741 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 3.2e-87 328.2 697 37.0
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 9.3e-87 326.6 556 40.8
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.0e-86 323.9 501 42.9
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 8.7e-77 293.5 297 55.6
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 6.7e-69 267.3 533 38.8
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 9.0e-66 256.9 601 36.9
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.2e-55 220.7 311 56.9
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.1e-54 219.2 613 32.1
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 6.1e-54 217.6 361 41.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.0e-53 215.3 251 49.0
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.1e-53 214.5 536 34.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-52 211.8 534 34.8
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 7.4e-52 210.7 280 56.1
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.4e-50 206.5 235 53.2
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.1e-46 192.6 479 35.3
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 5.2e-45 188.0 521 33.2
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.4e-44 184.9 150 59.3
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.6e-41 176.4 945 24.8
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.0e-40 173.7 204 50.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.5e-40 170.6 723 27.9
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 9.4e-39 167.2 500 32.4
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 5.7e-28 131.3 349 36.1
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.5e-20 106.7 658 24.3
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-19 103.6 155 55.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.0e-18 97.8 129 52.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.3e-15 87.8 78 57.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-14 86.3 232 31.9
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.2e-13 81.6 668 26.8
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 8.3e-11 74.3 131 42.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.1e-10 73.9 64 57.8
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 3.3e-07 62.4 67 59.7
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 3.3e-07 62.4 67 59.7
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 5.6e-07 61.6 305 24.9


User provided reference genes

Program Settings