Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003532m.g Citrus clementina HOM05D001300 ORTHO05D152360 1.7e-29 132.1 70 100.0
Ciclev10007872m.g Citrus clementina HOM05D001300 ORTHO05D004991 2.9e-10 68.2 62 61.3
AL8G32490 Arabidopsis lyrata HOM05D001300 ORTHO05D004991 3.2e-09 64.7 58 58.6
Carub.0008s1715 Capsella rubella HOM05D001300 ORTHO05D004991 7.2e-09 63.5 58 58.6
Hma1.2p1_1074F.1_g254420 Hydrangea macrophylla HOM05D001300 ORTHO05D004991 1.2e-08 62.8 60 60.0
Solyc10g080710.2 Solanum lycopersicum HOM05D001300 ORTHO05D004991 1.2e-08 62.8 65 58.5
Sopen10g031250 Solanum pennellii HOM05D001300 ORTHO05D004991 1.2e-08 62.8 65 58.5
PGSC0003DMG400023661 Solanum tuberosum HOM05D001300 ORTHO05D004991 1.2e-08 62.8 65 58.5
Oeu021466.2 Olea europaea HOM05D001300 ORTHO05D004991 1.6e-08 62.4 65 56.9
Sp6g18450 Schrenkiella parvula HOM05D001300 ORTHO05D004991 1.6e-08 62.4 60 56.7
Actinidia39751 Actinidia chinensis HOM05D001300 ORTHO05D004991 2.1e-08 62.0 65 53.8
AT5G56680 Arabidopsis thaliana HOM05D001300 ORTHO05D004991 2.1e-08 62.0 58 56.9
CAN.G128.65 Capsicum annuum HOM05D001300 ORTHO05D004991 2.1e-08 62.0 70 52.9
Migut.J00435 Erythranthe guttata HOM05D001300 ORTHO05D004991 2.1e-08 62.0 66 54.5
Lj7A670G56 Lonicera japonica HOM05D001300 ORTHO05D004991 2.1e-08 62.0 55 63.6
Nitab4.5_0002445g0030 Nicotiana tabacum HOM05D001300 ORTHO05D004991 2.1e-08 62.0 65 56.9
Nitab4.5_0010347g0010 Nicotiana tabacum HOM05D001300 ORTHO05D004991 2.1e-08 62.0 65 56.9
AL239U10010 Arabidopsis lyrata HOM05D001300 ORTHO05D013451 2.7e-08 61.6 53 60.4
BcaC01g06442 Brassica carinata HOM05D001300 ORTHO05D004991 2.7e-08 61.6 60 55.0
C03p15510 Brassica napus HOM05D001300 ORTHO05D004991 2.7e-08 61.6 60 55.0
BolC3t13989H Brassica oleracea HOM05D001300 ORTHO05D004991 2.7e-08 61.6 60 55.0
BraA03t10636Z Brassica rapa HOM05D001300 ORTHO05D004991 2.7e-08 61.6 60 55.0
BcaB01g04415 Brassica carinata HOM05D001300 ORTHO05D004991 3.6e-08 61.2 60 53.3
A03p13240 Brassica napus HOM05D001300 ORTHO05D004991 3.6e-08 61.2 60 53.3
CANSAT56G3149 Cannabis sativa HOM05D001300 ORTHO05D004991 3.6e-08 61.2 54 63.0
Atru.chr7.1517 Acer truncatum HOM05D001300 ORTHO05D004991 4.7e-08 60.8 60 60.0
MSTRG.6035 Avicennia marina HOM05D001300 ORTHO05D004991 4.7e-08 60.8 66 54.5
CARHR270370 Cardamine hirsuta HOM05D001300 ORTHO05D004991 6.1e-08 60.5 60 58.3
Dinv42285 Davidia involucrata HOM05D001300 ORTHO05D004991 6.1e-08 60.5 60 58.3
TAR624G0867 Trochodendron aralioides HOM05D001300 ORTHO05D004991 6.1e-08 60.5 70 52.9
BcaB08g36069 Brassica carinata HOM05D001300 ORTHO05D004991 8.0e-08 60.1 60 51.7
CSS0036126 Camellia sinensis var. sinensis HOM05D001300 ORTHO05D004991 1.0e-07 59.7 55 61.8
CSS0047906 Camellia sinensis var. sinensis HOM05D001300 ORTHO05D004991 1.0e-07 59.7 55 61.8
Nitab4.5_0000001g0370 Nicotiana tabacum HOM05D001300 ORTHO05D004991 1.0e-07 59.7 70 51.4
Nitab4.5_0001093g0080 Nicotiana tabacum HOM05D001300 ORTHO05D004991 1.0e-07 59.7 70 51.4
Oeu000333.1 Olea europaea HOM05D001300 ORTHO05D004991 1.0e-07 59.7 65 56.9
RcHm_v2.0_Chr5g0028961 Rosa chinensis HOM05D001300 ORTHO05D004991 1.0e-07 59.7 58 56.9
PGR102G2619 Punica granatum HOM05D001300 ORTHO05D004991 1.4e-07 59.3 60 56.7
BraA10t43495Z Brassica rapa HOM05D001300 ORTHO05D004991 1.8e-07 58.9 60 50.0
CiPaw.03G220200 Carya illinoinensis HOM05D001300 ORTHO05D004991 1.8e-07 58.9 55 58.2
Medtr8g102050 Medicago truncatula HOM05D001300 ORTHO05D004991 1.8e-07 58.9 55 61.8
Nn5g28583 Nelumbo nucifera HOM05D001300 ORTHO05D004991 1.8e-07 58.9 55 61.8
Peaxi162Scf00076g00920 Petunia axillaris HOM05D001300 ORTHO05D004991 1.8e-07 58.9 65 53.8
QL02p064866 Quercus lobata HOM05D001300 ORTHO05D004991 1.8e-07 58.9 55 60.0
Rhsim05G0030300 Rhododendron simsii HOM05D001300 ORTHO05D004991 1.8e-07 58.9 62 50.0
SGA_v2.0_scaffold62G21572 Striga asiatica HOM05D001300 ORTHO05D004991 1.8e-07 58.9 66 51.5
A10p14040 Brassica napus HOM05D001300 ORTHO05D004991 2.3e-07 58.5 60 50.0
CSS0035767 Camellia sinensis var. sinensis HOM05D001300 ORTHO05D004991 2.3e-07 58.5 55 61.8
Cpa.g.sc78.58 Carica papaya HOM05D001300 ORTHO05D004991 2.3e-07 58.5 60 55.0
Haze_25863 Corylus avellana HOM05D001300 ORTHO05D004991 2.3e-07 58.5 60 56.7
THA.LOC104813487 Tarenaya hassleriana HOM05D001300 ORTHO05D004991 2.3e-07 58.5 60 58.3
TWI63G1460 Tripterygium wilfordii HOM05D001300 ORTHO05D004991 2.3e-07 58.5 55 60.0
TAR626G0430 Trochodendron aralioides HOM05D001300 ORTHO05D004991 2.3e-07 58.5 70 52.9
vmacro07309 Vaccinium macrocarpon HOM05D001300 ORTHO05D004991 2.3e-07 58.5 60 51.7
GSVIVG01015254001 Vitis vinifera HOM05D001300 ORTHO05D004991 2.3e-07 58.5 55 60.0
Cfa003139 Carpinus fangiana HOM05D001300 ORTHO05D004991 3.0e-07 58.2 55 60.0
Nn8g38968 Nelumbo nucifera HOM05D001300 ORTHO05D004991 3.0e-07 58.2 60 58.3
Sc08g0008220 Simmondsia chinensis HOM05D001300 ORTHO05D004991 3.0e-07 58.2 60 53.3
TAR636G3225 Trochodendron aralioides HOM05D001300 ORTHO05D004991 3.0e-07 58.2 65 55.4
BcaC04g20061 Brassica carinata HOM05D001300 ORTHO05D004991 4.0e-07 57.8 60 50.0
C09p48270 Brassica napus HOM05D001300 ORTHO05D004991 4.0e-07 57.8 60 50.0
BolC9t57677H Brassica oleracea HOM05D001300 ORTHO05D004991 4.0e-07 57.8 60 50.0
Nn1g06241 Nelumbo nucifera HOM05D001300 ORTHO05D004991 4.0e-07 57.8 55 60.0
Sabra06G0122100 Salix brachista HOM05D001300 ORTHO05D004991 5.2e-07 57.4 55 60.0
AT1G70980 Arabidopsis thaliana HOM05D001300 ORTHO05D004991 6.7e-07 57.0 53 58.5
Manes.03G030200 Manihot esculenta HOM05D001300 ORTHO05D004991 6.7e-07 57.0 62 54.8
Potri.018G070000 Populus trichocarpa HOM05D001300 ORTHO05D004991 6.7e-07 57.0 55 58.2
PGR087G0003 Punica granatum HOM05D001300 ORTHO05D004991 6.7e-07 57.0 55 60.0
PGR142G2819 Punica granatum HOM05D001300 ORTHO05D004991 6.7e-07 57.0 55 60.0
Sabra18G0061300 Salix brachista HOM05D001300 ORTHO05D004991 6.7e-07 57.0 55 58.2
HPP92_017206 Vanilla planifolia HOM05D001300 ORTHO05D004991 6.7e-07 57.0 55 58.2
CAN.G1398.6 Capsicum annuum HOM05D001300 ORTHO05D004991 8.8e-07 56.6 72 48.6
Thhalv10013096m.g Eutrema salsugineum HOM05D001300 ORTHO05D004991 8.8e-07 56.6 60 53.3
Lj4g0012236 Lotus japonicus HOM05D001300 ORTHO05D004991 8.8e-07 56.6 60 53.3
Potri.006G153900 Populus trichocarpa HOM05D001300 ORTHO05D004991 8.8e-07 56.6 55 60.0
THA.LOC104811732 Tarenaya hassleriana HOM05D001300 ORTHO05D004991 8.8e-07 56.6 60 55.0
TWI32G0576 Tripterygium wilfordii HOM05D001300 ORTHO05D004991 8.8e-07 56.6 60 53.3
PSO063G3523 Papaver somniferum HOM05D001300 ORTHO05D004991 1.2e-06 56.2 70 48.6
Aa31LG3G12520 Aethionema arabicum HOM05D001300 ORTHO05D004991 1.5e-06 55.8 55 56.4
Eucgr.C00933 Eucalyptus grandis HOM05D001300 ORTHO05D004991 1.5e-06 55.8 60 56.7
MD03G1251800 Malus domestica HOM05D001300 ORTHO05D004991 1.5e-06 55.8 53 60.4
DCAR_010685 Daucus carota HOM05D001300 ORTHO05D004991 2.0e-06 55.5 55 54.5
Thhalv10000517m.g Eutrema salsugineum HOM05D001300 ORTHO05D004991 2.0e-06 55.5 56 57.1
FvH4_3g17430 Fragaria vesca HOM05D001300 ORTHO05D004991 2.0e-06 55.5 53 56.6
FAN11G0240 Fragaria x ananassa HOM05D001300 ORTHO05D004991 2.0e-06 55.5 53 56.6
FAN16G2390 Fragaria x ananassa HOM05D001300 ORTHO05D004991 2.0e-06 55.5 53 56.6
FAN21G3178 Fragaria x ananassa HOM05D001300 ORTHO05D004991 2.0e-06 55.5 53 56.6
MBI01_g14455_MAGBIO Magnolia biondii HOM05D001300 ORTHO05D004991 2.0e-06 55.5 50 58.0
Ca_17383_v3 Cicer arietinum L. HOM05D001300 ORTHO05D004991 2.6e-06 55.1 55 58.2
COL.COLO4_18255 Corchorus olitorius HOM05D001300 ORTHO05D004991 2.6e-06 55.1 60 50.0
ECA238G1281 Erigeron canadensis HOM05D001300 ORTHO05D004991 2.6e-06 55.1 55 52.7
Gohir.A06G070200 Gossypium hirsutum HOM05D001300 ORTHO05D004991 2.6e-06 55.1 72 44.4
Gohir.D06G068800 Gossypium hirsutum HOM05D001300 ORTHO05D004991 2.6e-06 55.1 70 45.7
Gorai.010G080400 Gossypium raimondii HOM05D001300 ORTHO05D004991 2.6e-06 55.1 70 45.7
HanXRQChr01g0030431 Helianthus annuus HOM05D001300 ORTHO05D004991 2.6e-06 55.1 55 54.5
HanXRQChr01g0030441 Helianthus annuus HOM05D001300 ORTHO05D004991 2.6e-06 55.1 55 54.5
PSO832G0327 Papaver somniferum HOM05D001300 ORTHO05D004991 2.6e-06 55.1 60 51.7
TPR.G25444 Trifolium pratense HOM05D001300 ORTHO05D004991 2.6e-06 55.1 60 53.3
MD11G1273000 Malus domestica HOM05D001300 ORTHO05D004991 3.3e-06 54.7 53 58.5
Cc06_g10910 Coffea canephora HOM05D001300 ORTHO05D004991 4.4e-06 54.3 49 65.3
Medtr7g101050 Medicago truncatula HOM05D001300 ORTHO05D004991 4.4e-06 54.3 55 54.5
SalBow6G1251 Salvia bowleyana HOM05D001300 ORTHO05D004991 4.4e-06 54.3 68 51.5
Duzib187G1049 Durio zibethinus HOM05D001300 ORTHO05D004991 5.7e-06 53.9 60 48.3
MBI13_g35418_MAGBIO Magnolia biondii HOM05D001300 ORTHO05D004991 5.7e-06 53.9 55 56.4
Phvul.002G305800 Phaseolus vulgaris HOM05D001300 ORTHO05D004991 5.7e-06 53.9 50 62.0
VMungo0251G2154 Vigna mungo HOM05D001300 ORTHO05D004991 5.7e-06 53.9 50 62.0
arahy.Tifrunner.gnm1.ann1.EPEJ84 Arachis hypogaea HOM05D001300 ORTHO05D004991 7.5e-06 53.5 50 58.0
Thecc.09G095000 Theobroma cacao HOM05D001300 ORTHO05D004991 7.5e-06 53.5 60 48.3


User provided reference genes

Program Settings