Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 2290.8 1173 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1815.4 1205 76.9
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1813.5 1212 76.9
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1800.8 1205 76.7
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1792.7 1203 76.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1792.7 1207 75.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1788.1 1205 75.4
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1786.9 1207 75.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1785.4 1208 76.2
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1776.5 1208 75.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1772.7 1208 75.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1771.9 1206 75.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1771.1 1205 75.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1752.3 1209 73.8
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1751.5 1205 74.5
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1747.6 1210 74.4
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1747.3 1207 74.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1744.2 1206 73.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1740.3 1200 74.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1724.1 1138 76.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1716.8 1216 72.7
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1716.4 1203 73.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1710.3 1184 73.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1704.5 1208 72.6
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1703.7 1207 72.7
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1695.6 1208 71.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1694.5 1208 72.0
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1692.9 1182 74.4
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1690.2 1207 70.7
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1687.5 1206 71.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1687.5 1206 72.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1679.8 1206 71.6
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1674.1 1161 72.9
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1673.7 1206 71.3
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1206 71.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1204 71.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1667.5 1203 71.3
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1216 70.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1665.2 1205 70.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1662.9 1203 71.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1661.0 1199 71.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1659.0 1208 69.2
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1658.7 1207 70.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1648.3 1222 69.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1646.7 1205 68.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1645.6 1207 69.8
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1643.6 1210 69.2
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1635.5 1199 70.9
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1207 68.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1624.8 1206 68.4
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1623.6 1208 69.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1620.9 1208 69.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1617.4 1202 68.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1615.1 1202 67.9
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1613.6 1204 68.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1613.6 1210 68.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1611.3 1204 68.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1605.1 1208 67.6
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1604.0 1166 70.3
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1603.2 1211 68.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1601.6 1206 67.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1596.3 1205 67.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1589.3 1208 66.6
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1585.5 1201 68.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1583.2 1203 67.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1186 69.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1204 66.8
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1207 67.1
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1572.4 1208 67.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1570.4 1210 68.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1560.4 1208 65.1
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1557.0 1194 66.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1554.7 1203 67.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1209 66.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1546.2 1185 66.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1543.5 1206 66.3
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1536.9 1209 65.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1536.2 1201 65.1
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1530.8 1193 65.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1528.1 1121 70.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1528.1 1194 65.2
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1525.0 1203 64.2
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1522.7 1184 66.6
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1216 63.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1516.1 1199 65.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1510.0 1202 65.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1499.2 1246 63.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1490.7 1206 65.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1135 66.4
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1481.5 1201 64.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1448.7 1136 65.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1434.9 1208 62.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1421.8 973 74.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1417.5 1257 61.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1385.5 1202 58.8
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1375.9 1204 61.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1347.8 1027 67.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1347.4 1146 60.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1334.7 1198 56.7
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1307.7 1043 65.4
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1264.6 1221 55.9
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1230.7 963 68.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1169.1 834 73.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1134.0 892 64.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1097.8 802 70.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 8.2e-291 1004.2 1118 52.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.7e-262 908.7 1223 42.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.0e-261 907.5 1230 42.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 9.8e-260 901.0 1213 43.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 6.0e-257 891.7 635 72.0
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.2e-243 846.7 1114 43.9
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.6e-238 829.3 1115 43.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-235 820.1 1051 46.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-233 814.3 1115 42.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.1e-231 807.7 1211 39.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.4e-229 800.0 1101 42.9
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 9.6e-215 751.5 598 67.7
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.3e-206 722.2 793 48.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.0e-203 714.9 1219 36.7
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.5e-202 709.1 570 63.7
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-186 658.3 636 55.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.7e-185 653.7 539 61.8
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.2e-178 630.2 418 74.9
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.2e-160 569.7 497 64.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-155 553.9 485 58.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.2e-129 466.5 319 74.9
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-117 429.1 295 74.2
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.8e-81 308.1 210 73.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.7e-81 307.8 210 71.9
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.0e-79 302.0 1343 24.3
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.1e-76 292.0 267 55.8
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.6e-74 285.0 185 78.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.5e-63 247.7 235 58.3
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.4e-56 225.3 440 33.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.5e-50 203.8 509 29.1
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.6e-31 142.9 96 80.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.1e-28 132.5 96 71.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.6e-18 99.0 576 24.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.3e-17 96.7 90 55.6
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.9e-16 92.8 73 61.6
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.5e-15 88.6 63 69.8
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 5.1e-14 84.7 79 53.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.1e-13 83.6 79 58.2
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 7.3e-13 80.9 325 26.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.1e-12 79.3 172 38.4
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.8e-12 79.0 335 25.1
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 6.2e-12 77.8 54 72.2
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.2e-12 77.8 49 81.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.2e-12 77.8 49 81.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.4e-11 76.6 72 51.4
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.8e-11 76.3 54 70.4
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.4e-11 75.9 69 53.6
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 9.2e-08 63.9 48 62.5
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 3.9e-06 58.5 62 53.2
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 6.6e-06 57.8 35 77.1


User provided reference genes

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