Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.6e-76 288.5 185 100.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.3e-62 243.4 186 80.6
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 3.8e-57 225.3 194 78.4
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.6e-55 219.9 190 66.3
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.5e-55 218.8 191 63.9
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.8e-54 216.5 189 82.0
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.0e-54 215.7 189 74.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 6.7e-54 214.5 190 64.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.3e-53 212.2 189 65.6
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 3.3e-53 212.2 189 65.1
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.3e-53 211.8 189 75.1
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 7.4e-53 211.1 188 75.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.4e-53 211.1 196 61.2
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.1e-52 209.5 186 62.9
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.8e-52 208.4 189 68.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 8.2e-52 207.6 185 74.6
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.1e-51 205.3 149 73.2
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 6.9e-51 204.5 192 71.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 9.0e-51 204.1 207 60.9
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.2e-50 203.8 185 69.2
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.5e-50 203.4 194 61.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.5e-50 203.4 185 67.0
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 2.0e-50 203.0 187 64.7
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.6e-50 202.6 189 69.8
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.6e-50 202.6 189 68.8
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 3.4e-50 202.2 149 76.5
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 5.9e-50 201.4 189 70.9
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 7.6e-50 201.1 188 65.4
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.7e-49 199.9 185 75.1
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.2e-49 199.5 192 74.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.9e-49 199.1 186 63.4
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 5.0e-49 198.4 187 72.2
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 6.5e-49 198.0 185 73.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.4e-48 196.8 187 73.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.5e-48 196.1 185 64.9
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.2e-48 195.7 149 77.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.2e-48 195.3 186 58.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 4.2e-48 195.3 188 73.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 5.5e-48 194.9 203 57.6
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.2e-48 194.5 187 66.3
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 7.2e-48 194.5 149 67.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.3e-48 194.1 203 57.1
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.3e-48 194.1 149 67.8
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-47 193.7 189 73.5
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.1e-47 193.0 192 75.5
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.6e-47 192.2 186 72.6
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 6.1e-47 191.4 195 65.6
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 7.9e-47 191.0 189 62.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.0e-46 189.1 188 67.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.9e-46 188.7 145 66.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.7e-46 188.0 186 67.2
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 8.7e-46 187.6 149 71.1
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 8.7e-46 187.6 149 74.5
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 8.7e-46 187.6 192 62.0
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 8.7e-46 187.6 190 64.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 5.7e-45 184.9 186 64.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.3e-44 183.7 136 77.9
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-44 183.7 192 69.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 187 62.6
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.6e-44 183.3 150 71.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.2e-44 183.0 181 74.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.2e-44 183.0 185 62.7
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.2e-44 183.0 150 72.0
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.2e-44 183.0 151 71.5
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.8e-44 182.6 187 63.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.8e-44 182.6 148 73.6
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.8e-44 182.6 151 71.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.8e-44 181.8 186 69.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.8e-44 181.8 150 72.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.8e-44 181.8 184 66.3
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 8.2e-44 181.0 184 57.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 8.2e-44 181.0 151 70.9
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-43 180.6 151 72.8
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.4e-43 180.3 151 70.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.4e-43 179.5 151 72.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.4e-43 179.5 197 60.9
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 3.1e-43 179.1 151 67.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.1e-43 179.1 182 63.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 3.1e-43 179.1 182 62.1
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 3.1e-43 179.1 140 73.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 4.1e-43 178.7 191 58.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 5.3e-43 178.3 185 65.9
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 6.9e-43 177.9 190 59.5
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.9e-43 177.9 185 65.4
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 9.1e-43 177.6 189 64.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.1e-43 177.6 182 60.4
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.2e-42 177.2 197 61.4
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.2e-42 177.2 187 65.2
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.5e-42 176.8 185 56.2
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.4e-42 175.6 147 70.7
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 3.4e-42 175.6 150 68.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 5.9e-42 174.9 187 58.8
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.9e-42 174.9 142 74.6
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.3e-41 173.7 187 58.3
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.3e-41 173.7 187 61.5
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.7e-41 173.3 140 70.7
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.2e-41 172.9 185 61.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.2e-41 172.9 185 61.6
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 2.2e-41 172.9 148 61.5
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.9e-41 172.6 177 62.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 5.0e-41 171.8 185 57.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 5.0e-41 171.8 186 65.1
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 6.5e-41 171.4 187 62.0
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 8.5e-41 171.0 187 66.3
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.4e-40 170.2 188 66.0
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-40 170.2 192 64.1
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.9e-40 169.9 147 66.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 3.2e-40 169.1 188 63.3
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 4.2e-40 168.7 186 60.8
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 5.5e-40 168.3 185 61.1
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 7.2e-40 167.9 147 63.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 9.4e-40 167.5 141 72.3
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.1e-39 166.4 140 69.3
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 3.9e-38 162.2 220 59.5
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 6.7e-38 161.4 186 59.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.7e-38 161.4 126 68.3
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 8.8e-38 161.0 152 63.8
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.1e-37 160.6 85 89.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.8e-36 155.2 94 83.0
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 5.3e-35 151.8 195 52.3
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.3e-35 151.8 162 51.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 9.1e-35 151.0 126 69.8
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 9.1e-35 151.0 169 64.5
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 5.0e-33 145.2 159 57.2
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.0e-30 136.0 75 86.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.1e-29 134.0 70 88.6
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 8.2e-28 127.9 69 81.2
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.3e-25 120.6 114 57.9
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-25 119.0 112 67.9
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.5e-24 117.1 152 53.9
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.4e-22 110.5 82 62.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.3e-22 109.8 152 54.6
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 2.0e-21 106.7 118 65.3
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 3.7e-20 102.4 62 75.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 6.3e-20 101.7 67 74.6
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.1e-19 100.9 133 51.1
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.1e-19 100.9 172 53.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 5.3e-19 98.6 80 57.5
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.2e-17 93.2 82 53.7
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.9e-17 92.8 80 52.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.2e-16 89.4 56 76.8
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 8.0e-15 84.7 150 51.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 5.9e-10 68.6 67 53.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.6e-07 59.3 39 59.0


User provided reference genes

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