Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 7.1e-68 260.4 124 100.0
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 1.6e-48 196.1 135 72.6
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 2.8e-48 195.3 135 73.3
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 2.0e-38 162.5 132 66.7
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 3.8e-37 158.3 132 65.2
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 3.0e-34 148.7 129 64.3
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 3.9e-34 148.3 139 56.8
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 6.7e-34 147.5 135 62.2
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 1.5e-33 146.4 139 56.8
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.3e-32 143.3 138 59.4
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 4.8e-32 141.4 125 63.2
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 6.3e-32 141.0 125 61.6
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.8e-31 139.4 133 60.2
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.8e-31 139.4 133 60.2
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 4.1e-31 138.3 125 58.4
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 4.1e-31 138.3 144 51.4
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 7.0e-31 137.5 135 60.7
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 9.1e-31 137.1 144 54.2
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 9.1e-31 137.1 144 53.5
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 1.6e-30 136.3 125 56.8
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 4.5e-30 134.8 123 58.5
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 1.7e-29 132.9 125 58.4
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 2.2e-29 132.5 135 56.3
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 1.5e-28 129.8 132 57.6
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.5e-28 129.8 132 57.6
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.5e-28 129.8 126 54.0
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 9.4e-28 127.1 141 55.3
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.2e-27 126.7 132 56.8
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 4.7e-27 124.8 125 58.4
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.0e-26 123.6 132 54.5
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 1.4e-26 123.2 130 55.4
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.3e-26 122.5 139 51.8
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 4.0e-26 121.7 128 55.5
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 4.0e-26 121.7 130 52.3
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 5.2e-26 121.3 126 56.3
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 2.0e-25 119.4 137 53.3
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 9.7e-25 117.1 127 55.1
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 2.2e-24 115.9 128 53.1
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 2.2e-24 115.9 135 51.9
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 2.2e-24 115.9 139 54.0
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 2.8e-24 115.5 137 51.8
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 4.8e-24 114.8 131 51.9
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 6.3e-24 114.4 139 47.5
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 8.2e-24 114.0 119 55.5
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.8e-23 112.8 131 51.1
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 3.1e-23 112.1 128 51.6
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 5.3e-23 111.3 130 50.8
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.6e-22 109.8 119 48.7
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 1.6e-22 109.8 132 51.5
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 3.5e-22 108.6 119 54.6
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 5.9e-22 107.8 93 57.0
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 5.9e-22 107.8 134 50.7
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.2e-21 105.9 97 57.7
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.9e-21 105.5 97 56.7
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 3.8e-21 105.1 95 54.7
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 8.5e-21 104.0 127 49.6
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.2e-19 100.1 128 49.2
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.2e-19 100.1 128 49.2
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.7e-19 99.0 124 50.0
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 3.6e-19 98.6 123 45.5
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.8e-18 96.3 131 48.1
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 1.8e-18 96.3 116 48.3
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 2.3e-18 95.9 123 45.5
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 3.0e-18 95.5 128 44.5
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 8.8e-18 94.0 123 45.5
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 7.5e-17 90.9 123 47.2
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 7.5e-17 90.9 123 47.2
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 1.3e-16 90.1 116 44.8
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.8e-16 89.0 123 45.5
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 4.8e-16 88.2 121 46.3
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.1e-15 87.0 136 41.2
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.4e-15 86.7 124 43.5
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 4.5e-14 81.6 59 71.2
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 2.7e-11 72.4 134 40.3
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 1.4e-10 70.1 102 41.2
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.7e-08 63.2 120 35.8
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 6.3e-08 61.2 105 40.0
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 3.1e-07 58.9 62 56.5
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 4.1e-07 58.5 53 52.8
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 4.1e-07 58.5 40 62.5
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 7.0e-07 57.8 49 59.2
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 7.0e-07 57.8 49 59.2
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 7.0e-07 57.8 45 57.8
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 9.2e-07 57.4 65 44.6
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 9.2e-07 57.4 43 58.1
Dinv05804 Davidia involucrata HOM05D002803 ORTHO05D003089 1.2e-06 57.0 63 46.0
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 1.6e-06 56.6 40 57.5
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.7e-06 55.8 53 49.1
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.7e-06 55.8 53 49.1
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 2.7e-06 55.8 61 47.5
Aa31LG10G4930 Aethionema arabicum HOM05D002803 ORTHO05D003089 3.5e-06 55.5 57 43.9
CiPaw.16G083500 Carya illinoinensis HOM05D002803 ORTHO05D003089 3.5e-06 55.5 52 53.8
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 3.5e-06 55.5 57 49.1
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 3.5e-06 55.5 63 44.4
PGR044G1398 Punica granatum HOM05D002803 ORTHO05D003089 3.5e-06 55.5 66 45.5
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 4.5e-06 55.1 113 34.5
Lj4g0013411 Lotus japonicus HOM05D002803 ORTHO05D003089 4.5e-06 55.1 54 50.0
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 4.5e-06 55.1 49 55.1
Ah.11g047160 Amaranthus hybridus HOM05D002803 ORTHO05D003089 5.9e-06 54.7 103 37.9
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 5.9e-06 54.7 45 55.6
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 5.9e-06 54.7 42 57.1
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 5.9e-06 54.7 52 46.2
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 5.9e-06 54.7 43 58.1
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 5.9e-06 54.7 43 58.1
Sed0004956 Sechium edule HOM05D002803 ORTHO05D003089 5.9e-06 54.7 43 58.1
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 7.7e-06 54.3 102 32.4
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 7.7e-06 54.3 40 60.0
Phvul.003G177700 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 7.7e-06 54.3 58 46.6
vmacro01362 Vaccinium macrocarpon HOM05D002803 ORTHO05D003089 7.7e-06 54.3 69 47.8


User provided reference genes

Program Settings