Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 0.0e+00 1113.6 542 100.0
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 6.3e-254 880.6 542 81.9
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.9e-245 852.4 544 79.8
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.6e-236 822.8 478 81.8
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 2.8e-233 812.0 540 74.6
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 6.8e-224 780.8 531 71.9
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 3.8e-222 775.0 532 71.2
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.4e-221 773.1 549 71.4
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.9e-221 772.7 473 79.1
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 4.2e-221 771.5 482 77.6
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 2.3e-219 765.8 530 71.7
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 8.7e-219 763.8 538 70.6
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 4.3e-218 761.5 475 78.9
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 5.6e-218 761.1 442 81.9
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.6e-218 761.1 439 82.0
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.1e-217 759.2 497 74.8
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 1.1e-216 756.9 496 75.8
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 3.1e-216 755.4 511 72.4
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 4.0e-216 755.0 439 81.3
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 6.9e-216 754.2 529 70.5
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 2.6e-215 752.3 450 80.2
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 4.4e-215 751.5 450 79.1
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 4.4e-215 751.5 450 79.1
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 4.4e-215 751.5 499 73.1
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 9.9e-215 750.4 477 75.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 2.9e-214 748.8 460 77.2
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.8e-214 748.4 439 80.6
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 2.4e-213 745.7 549 68.9
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.6e-212 743.0 523 70.6
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 1.6e-212 743.0 481 75.5
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.3e-211 740.0 499 71.5
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.3e-211 740.0 499 71.5
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 8.7e-211 737.3 487 72.9
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 8.7e-211 737.3 416 82.7
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.9e-210 736.1 485 74.6
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.9e-210 736.1 458 76.2
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 3.3e-210 735.3 466 76.2
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 4.3e-210 734.9 491 73.5
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 4.3e-210 734.9 470 75.7
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 4.3e-210 734.9 490 73.7
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 7.3e-210 734.2 481 74.8
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.6e-209 733.0 480 74.4
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 2.1e-209 732.6 472 75.0
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.4e-208 729.9 485 73.6
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 6.9e-208 727.6 490 72.9
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 2.6e-207 725.7 487 71.7
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 2.6e-207 725.7 468 75.0
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 9.9e-207 723.8 446 78.9
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.7e-206 723.0 474 74.5
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 1.4e-205 719.9 405 84.0
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 3.2e-205 718.8 471 74.5
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 1.2e-204 716.8 479 73.9
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.2e-204 716.8 458 76.2
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.1e-204 716.1 416 80.0
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 7.9e-204 714.1 500 71.0
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.0e-203 713.8 503 70.6
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.8e-203 713.0 463 76.7
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 3.3e-202 708.8 475 72.4
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 4.3e-202 708.4 547 65.6
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 9.6e-202 707.2 547 66.0
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 5.3e-200 701.4 471 72.2
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.0e-199 699.5 467 73.0
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 2.0e-199 699.5 487 70.8
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 3.4e-199 698.7 486 71.4
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 7.6e-199 697.6 465 73.8
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 1.3e-198 696.8 507 69.2
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 1.7e-198 696.4 484 71.5
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.7e-198 696.4 500 69.2
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 3.8e-198 695.3 505 68.5
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 8.4e-198 694.1 456 73.7
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 8.4e-198 694.1 497 70.8
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 1.4e-197 693.3 433 76.4
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 2.5e-197 692.6 483 70.6
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 1.2e-196 690.3 441 76.0
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 4.6e-196 688.3 473 71.7
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.0e-195 687.2 486 70.6
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 8.7e-195 684.1 455 71.6
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 1.9e-194 682.9 486 70.2
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 2.5e-194 682.6 474 72.2
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 5.7e-194 681.4 486 69.5
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 2.8e-193 679.1 505 67.1
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 2.8e-193 679.1 505 67.1
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 6.3e-193 677.9 445 73.7
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 2.2e-190 669.5 539 65.3
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 6.5e-190 667.9 372 84.4
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.9e-189 666.4 449 71.9
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.5e-186 656.8 489 67.3
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 9.7e-186 654.1 456 69.7
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 2.8e-185 652.5 424 74.3
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 3.2e-181 639.0 479 65.8
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 4.6e-180 635.2 479 66.4
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 8.2e-177 624.4 557 59.6
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 1.5e-175 620.2 495 64.4
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 7.7e-175 617.8 602 56.5
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.1e-168 597.4 366 75.4
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 2.4e-168 596.3 385 75.6
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 5.0e-166 588.6 488 61.9
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.3e-161 573.9 444 66.2
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 1.0e-158 564.3 406 69.0
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 6.8e-155 551.6 467 61.0
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 2.4e-152 543.1 553 55.7
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 1.1e-141 507.7 262 90.1
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 5.6e-141 505.4 272 87.1
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.6e-140 502.7 346 67.9
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 3.4e-138 496.1 440 58.6
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 2.2e-137 493.4 319 76.8
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.1e-136 491.1 380 62.6
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 2.0e-135 486.9 414 58.5
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 5.9e-135 485.3 422 57.1
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 4.9e-129 465.7 285 78.2
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 4.6e-127 459.1 328 70.1
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 3.2e-120 436.4 255 80.0
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.5e-117 426.8 357 63.6
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 3.1e-115 419.9 437 49.9
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.1e-112 411.4 384 54.4
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.6e-108 396.4 236 80.1
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 7.1e-104 382.1 384 51.8
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 4.8e-100 369.4 551 39.7
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.3e-93 346.7 280 62.5
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 2.4e-91 340.5 440 45.2
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 5.5e-72 276.2 188 71.8
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 2.1e-71 274.2 191 69.1
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.6e-68 264.6 175 72.0
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 8.8e-54 215.7 140 72.9
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 7.4e-53 212.6 190 60.0
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.1e-51 208.8 184 58.2
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 3.1e-51 207.2 316 37.3
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 7.0e-51 206.1 289 41.9
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 1.5e-48 198.4 407 32.4
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 7.2e-48 196.1 184 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.1e-47 194.5 331 34.4
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.2e-45 188.7 115 76.5
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 1.2e-42 178.7 387 33.6
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 6.5e-41 172.9 143 60.8
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 7.2e-40 169.5 299 38.1
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 4.4e-37 160.2 131 65.6
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 2.8e-36 157.5 307 32.6
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.7e-33 148.3 74 83.8
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.0e-26 124.8 117 59.0
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.7e-25 121.7 98 63.3
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 2.5e-24 117.9 113 58.4
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.4e-22 112.1 253 34.8
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.0e-22 110.9 103 51.5
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 1.3e-17 95.5 99 54.5
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 7.3e-16 89.7 87 64.4
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 8.3e-12 76.3 108 45.4
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.3e-09 68.9 38 86.8
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 3.3e-08 64.3 31 83.9
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 1.2e-07 62.4 128 35.9
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 1.6e-07 62.0 146 30.1
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 3.6e-07 60.8 128 35.2
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 8.1e-07 59.7 93 39.8


User provided reference genes

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