Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.8e-25 117.9 60 100.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.9e-21 105.1 60 86.7
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 7.8e-20 99.8 60 81.7
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.3e-19 99.0 60 81.7
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.0e-19 97.8 60 81.7
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.6e-18 93.6 60 78.3
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 8.3e-14 79.7 55 69.1
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 3.2e-13 77.8 56 67.9
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 9.2e-13 76.3 60 66.7
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 1.6e-12 75.5 62 66.1
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 3.5e-12 74.3 55 69.1
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 4.6e-12 73.9 62 66.1
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 6.0e-12 73.6 61 63.9
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 6.0e-12 73.6 60 61.7
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 6.0e-12 73.6 60 65.0
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 7.8e-12 73.2 55 65.5
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.0e-11 72.8 55 65.5
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 1.3e-11 72.4 54 68.5
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 1.3e-11 72.4 54 68.5
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.3e-11 72.4 60 63.3
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.7e-11 72.0 60 63.3
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 1.7e-11 72.0 54 64.8
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 2.3e-11 71.6 55 70.9
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 2.3e-11 71.6 60 65.0
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.0e-11 71.2 60 63.3
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.0e-11 71.2 57 66.7
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 3.9e-11 70.9 56 62.5
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 3.9e-11 70.9 60 66.7
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 8.6e-11 69.7 60 63.3
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 8.6e-11 69.7 49 67.3
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.5e-10 68.9 52 65.4
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 1.5e-10 68.9 55 67.3
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.9e-10 68.6 60 61.7
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.9e-10 68.6 60 61.7
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 2.5e-10 68.2 51 64.7
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 3.3e-10 67.8 60 61.7
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 3.3e-10 67.8 60 61.7
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.3e-10 67.8 60 60.0
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 3.3e-10 67.8 60 60.0
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 4.3e-10 67.4 50 66.0
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 4.3e-10 67.4 60 61.7
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.3e-10 67.4 49 69.4
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 5.6e-10 67.0 57 57.9
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 5.6e-10 67.0 60 60.0
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 7.3e-10 66.6 52 65.4
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 9.5e-10 66.2 60 58.3
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.2e-09 65.9 54 59.3
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.2e-09 65.9 60 56.7
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.2e-09 65.9 52 59.6
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 1.2e-09 65.9 50 66.0
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.6e-09 65.5 61 59.0
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.6e-09 65.5 61 59.0
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.6e-09 65.5 60 56.7
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 2.1e-09 65.1 60 58.3
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 2.1e-09 65.1 54 64.8
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 2.1e-09 65.1 54 57.4
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 2.8e-09 64.7 60 58.3
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 2.8e-09 64.7 59 55.9
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 3.6e-09 64.3 57 56.1
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.7e-09 63.9 60 58.3
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 4.7e-09 63.9 62 56.5
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 4.7e-09 63.9 60 55.0
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 4.7e-09 63.9 58 60.3
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 6.2e-09 63.5 60 58.3
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 8.1e-09 63.2 55 61.8
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 8.1e-09 63.2 49 65.3
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 8.1e-09 63.2 75 49.3
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.1e-08 62.8 60 56.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 1.1e-08 62.8 55 61.8
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 1.8e-08 62.0 60 56.7
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 2.3e-08 61.6 60 56.7
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 2.3e-08 61.6 60 56.7
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 4.0e-08 60.8 56 53.6
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 4.0e-08 60.8 56 53.6
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 4.0e-08 60.8 56 53.6
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 4.0e-08 60.8 57 56.1
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.4e-07 57.8 41 68.3
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 4.4e-07 57.4 48 56.2
SHI07594 Sapria himalayana HOM05D007758 ORTHO05D009788 4.4e-07 57.4 47 59.6
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.6e-07 56.6 46 63.0
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.6e-07 56.6 46 63.0


User provided reference genes

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