Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.8e-140 501.1 248 100.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-114 416.4 215 96.7
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.6e-111 405.2 216 94.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-110 402.9 216 94.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.8e-102 374.4 261 78.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 5.4e-99 364.8 216 81.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-98 362.8 216 87.5
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.2e-85 320.5 216 78.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.1e-79 299.7 218 71.1
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 5.2e-78 295.0 216 67.6
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.0e-77 293.1 217 68.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.4e-77 292.0 217 67.7
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.9e-76 289.3 217 67.7
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.4e-75 286.2 217 67.3
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 5.4e-75 285.0 217 66.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.1e-74 283.1 217 64.5
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 6.0e-74 281.6 217 64.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 6.0e-74 281.6 216 65.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-73 280.8 219 67.1
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.6e-73 277.7 219 66.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.9e-72 276.6 216 63.9
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 7.3e-72 274.6 223 63.7
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-71 273.5 219 66.7
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.8e-71 272.7 216 63.4
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.6e-71 272.3 216 64.4
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 4.7e-71 271.9 218 63.8
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 8.1e-71 271.2 217 61.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 8.1e-71 271.2 216 63.4
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-70 270.4 216 65.3
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-70 270.0 217 65.9
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.8e-70 270.0 218 63.8
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.3e-70 269.6 216 63.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 5.2e-70 268.5 222 61.7
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-69 266.9 216 64.4
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 4.4e-69 265.4 216 65.3
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 5.8e-69 265.0 217 64.5
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 9.9e-69 264.2 216 60.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.7e-68 263.5 215 60.9
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.2e-68 263.1 217 61.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 6.4e-68 261.5 215 60.0
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 8.3e-68 261.2 217 63.1
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.3e-68 261.2 217 59.4
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.4e-67 260.4 218 63.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.2e-67 259.2 217 60.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 5.4e-67 258.5 216 60.2
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 5.4e-67 258.5 216 60.2
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.1e-67 258.1 191 74.9
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 9.2e-67 257.7 215 59.5
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.5e-66 255.8 216 58.8
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 7.8e-66 254.6 216 58.8
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.8e-66 254.6 216 60.2
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.3e-65 253.8 225 62.2
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.7e-65 253.4 218 57.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 2.3e-65 253.1 216 59.7
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.1e-65 251.9 220 59.1
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 5.1e-65 251.9 217 60.4
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.1e-64 250.8 216 60.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.9e-64 250.0 218 56.4
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.9e-64 250.0 217 57.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.2e-63 247.3 224 59.8
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 2.1e-63 246.5 216 55.6
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 3.6e-63 245.7 218 56.4
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 4.7e-63 245.4 217 56.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 6.2e-63 245.0 215 58.6
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-62 242.3 139 92.8
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 6.8e-62 241.5 223 59.2
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 8.9e-62 241.1 216 55.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.5e-61 240.4 217 56.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.5e-61 240.4 224 56.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-61 240.0 220 55.9
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.0e-61 240.0 220 55.9
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 2.6e-61 239.6 229 53.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-61 239.6 220 56.4
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 2.6e-61 239.6 220 56.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 7.6e-61 238.0 224 56.2
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.7e-60 236.9 217 56.2
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.7e-60 236.9 217 56.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 2.9e-60 236.1 216 56.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 4.2e-59 232.3 142 80.3
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-59 231.9 186 66.7
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.1e-59 231.5 123 91.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.1e-58 229.9 214 58.4
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 2.1e-58 229.9 217 53.9
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.1e-58 229.9 225 54.7
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.6e-58 228.8 221 54.3
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 6.0e-58 228.4 217 54.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 7.8e-58 228.0 159 70.4
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.3e-57 227.3 217 56.2
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.3e-57 227.3 217 55.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.3e-57 226.5 217 54.8
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.1e-57 225.3 217 56.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.9e-56 223.4 202 62.4
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.5e-56 223.0 216 54.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.3e-56 222.2 217 55.3
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.6e-56 221.9 218 54.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.2e-55 220.7 223 55.2
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.6e-55 220.3 224 55.8
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.2e-55 218.4 226 53.5
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.4e-54 217.2 217 54.4
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.8e-54 216.9 219 51.6
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 5.3e-54 215.3 217 52.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.5e-53 213.8 231 50.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.0e-53 213.4 221 52.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 4.4e-53 212.2 171 60.2
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.8e-53 211.8 217 53.5
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 5.4e-51 205.3 241 50.6
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-51 204.9 232 52.6
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.3e-49 199.9 238 47.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-48 197.6 220 48.6
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.3e-48 196.1 219 50.7
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.4e-46 190.7 230 49.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 3.1e-46 189.5 159 59.7
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-45 186.8 114 77.2
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 7.6e-45 184.9 217 51.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 7.1e-43 178.3 223 47.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.0e-41 174.5 216 48.1
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.9e-41 172.6 232 41.4
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-40 169.9 207 53.6
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.8e-39 166.4 217 47.9
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-36 156.4 188 49.5
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.3e-33 147.5 216 38.4
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 6.7e-33 145.2 109 61.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 8.2e-31 138.3 219 39.7
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.1e-30 137.9 153 51.0
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.1e-30 136.3 217 39.6
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-30 135.2 149 55.7
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-27 127.9 123 51.2
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.1e-26 123.6 227 33.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-22 110.5 70 68.6
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.2e-18 97.8 76 60.5
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-11 73.9 63 63.5
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.2e-10 71.2 67 44.8
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 2.7e-10 70.1 96 38.5
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.0e-09 68.2 88 47.7
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.4e-06 57.8 43 65.1
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 3.1e-06 56.6 56 48.2


User provided reference genes

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