Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 3.6e-118 428.3 228 100.0
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 6.9e-85 317.8 227 72.7
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.5e-84 316.6 227 72.2
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.5e-79 299.3 228 71.1
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.7e-75 286.6 172 83.7
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.8e-70 269.2 153 84.3
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 6.3e-70 268.1 158 82.3
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.8e-69 266.5 154 84.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.6e-68 262.7 158 79.7
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.0e-67 260.8 152 82.2
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.7e-67 260.0 153 82.4
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.2e-67 259.6 154 81.8
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.0e-67 258.5 154 81.8
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 6.5e-67 258.1 153 80.4
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.9e-66 256.5 154 79.9
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.9e-66 256.5 153 80.4
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.9e-66 256.5 153 77.8
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 2.5e-66 256.1 153 81.0
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 4.2e-66 255.4 153 81.7
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 7.2e-66 254.6 153 81.0
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 9.4e-66 254.2 154 80.5
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.2e-65 253.8 153 80.4
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.6e-65 253.4 152 80.9
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 2.7e-65 252.7 153 79.7
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.7e-65 252.7 153 79.7
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.7e-65 252.7 148 82.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.7e-65 252.7 153 77.8
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.7e-65 252.7 151 78.1
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.7e-65 252.7 150 79.3
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 3.6e-65 252.3 159 77.4
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.6e-65 252.3 151 81.5
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.6e-65 252.3 152 80.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.6e-65 252.3 152 77.0
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.6e-65 252.3 154 81.2
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 6.1e-65 251.5 150 80.0
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.1e-65 251.5 152 79.6
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 6.1e-65 251.5 153 77.8
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 7.9e-65 251.1 153 77.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.4e-64 250.4 158 78.5
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.4e-64 250.4 158 78.5
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.8e-64 250.0 158 77.8
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.3e-64 249.6 140 85.7
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 3.0e-64 249.2 153 77.1
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 3.9e-64 248.8 150 78.7
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 3.9e-64 248.8 144 82.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 8.8e-64 247.7 150 79.3
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 8.8e-64 247.7 154 77.3
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.1e-63 247.3 154 77.9
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.1e-63 247.3 158 77.8
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-63 246.9 152 77.6
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.0e-63 246.5 146 80.8
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 3.3e-63 245.7 152 77.0
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.7e-63 245.0 151 78.1
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 7.4e-63 244.6 147 80.3
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 7.4e-63 244.6 140 82.1
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 2.8e-62 242.7 154 76.0
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 6.3e-62 241.5 142 80.3
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 6.3e-62 241.5 153 75.8
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 1.1e-61 240.7 147 79.6
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.4e-61 240.4 150 74.7
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 3.1e-61 239.2 140 78.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 3.1e-61 239.2 140 78.6
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.1e-61 239.2 141 80.1
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 5.3e-61 238.4 192 62.0
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 7.0e-61 238.0 152 75.0
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 7.0e-61 238.0 192 62.0
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 9.1e-61 237.7 192 62.0
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.5e-60 236.9 142 78.2
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.5e-60 236.9 150 76.0
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 2.0e-60 236.5 152 73.0
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 2.6e-60 236.1 150 75.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 3.5e-60 235.7 149 76.5
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.5e-60 235.3 154 71.4
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 5.9e-60 235.0 142 78.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 5.9e-60 235.0 142 78.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 5.9e-60 235.0 142 78.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.0e-59 234.2 142 77.5
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.0e-59 234.2 145 77.9
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.0e-59 234.2 153 74.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.3e-59 233.8 142 76.8
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-59 233.8 146 76.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.7e-59 233.4 146 76.7
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.2e-59 233.0 155 72.9
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.2e-59 233.0 131 82.4
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 2.2e-59 233.0 150 74.7
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 6.5e-59 231.5 140 78.6
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 8.5e-59 231.1 141 77.3
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 8.5e-59 231.1 130 81.5
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.1e-58 230.7 211 57.8
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.9e-58 229.9 128 84.4
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 2.5e-58 229.6 129 82.9
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 4.2e-58 228.8 155 74.2
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 4.2e-58 228.8 149 72.5
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 4.2e-58 228.8 149 71.1
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 7.2e-58 228.0 142 73.9
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 9.4e-58 227.6 148 71.6
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.2e-57 227.3 127 83.5
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 2.1e-57 226.5 129 81.4
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.6e-57 225.7 133 78.9
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 3.6e-57 225.7 142 77.5
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 4.7e-57 225.3 133 78.2
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 4.7e-57 225.3 133 78.2
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 8.0e-57 224.6 147 72.8
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 8.0e-57 224.6 149 71.8
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 1.0e-56 224.2 128 81.2
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.4e-56 223.8 152 72.4
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 3.9e-56 222.2 154 68.2
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 2.0e-55 219.9 171 64.3
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 8.2e-54 214.5 123 79.7
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.1e-53 212.6 134 78.4
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.1e-50 204.1 128 75.8
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-50 203.8 129 76.0
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 5.2e-48 195.3 130 67.7
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 3.4e-47 192.6 150 62.0
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 9.8e-47 191.0 136 69.9
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.3e-46 188.3 145 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 3.1e-45 186.0 127 66.1
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-44 181.8 148 57.4
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.7e-44 181.4 148 58.1
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.7e-44 181.4 148 58.1
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 1.3e-38 164.1 93 84.9
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.6e-36 157.1 101 74.3
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.5e-34 149.8 80 88.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 7.2e-34 148.3 78 91.0
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 3.5e-28 129.4 118 57.6
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 5.0e-27 125.6 140 47.1
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.4e-24 117.5 73 82.2
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 3.4e-23 112.8 120 48.3
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.7e-22 110.5 140 42.9
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 3.9e-19 99.4 59 76.3
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 6.6e-19 98.6 61 72.1
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 9.8e-15 84.7 49 75.5
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.7e-14 82.8 51 72.5
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 6.4e-14 82.0 103 45.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 5.4e-13 79.0 53 75.5
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.7e-11 73.9 48 72.9
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 8.6e-11 71.6 46 67.4
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 2.5e-10 70.1 49 75.5
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-09 67.4 33 90.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.5e-07 60.8 74 47.3


User provided reference genes

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