Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 1.8e-22 108.6 65 100.0
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.8e-15 84.0 67 77.6
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.0e-12 76.3 65 76.9
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 2.5e-11 71.6 70 61.4
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 3.2e-11 71.2 65 61.5
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 4.2e-11 70.9 65 64.6
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 9.3e-11 69.7 65 66.2
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 9.3e-11 69.7 65 66.2
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.2e-10 69.3 65 64.6
Cfa010747 Carpinus fangiana HOM05D000430 ORTHO05D000305 2.1e-10 68.6 58 75.9
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.7e-10 68.2 65 69.2
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 3.5e-10 67.8 67 62.7
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 3.5e-10 67.8 65 63.1
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 6.1e-10 67.0 65 63.1
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 7.9e-10 66.6 65 61.5
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.0e-09 66.2 67 61.2
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-09 66.2 65 60.0
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.3e-09 65.9 65 61.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 60.0
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 60.0
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 60.0
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 64.6
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.8e-09 65.5 65 61.5
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 63.1
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 61.5
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 60.0
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 61.5
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 66.2
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 64.6
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 2.3e-09 65.1 65 63.1
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 61.5
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 60.0
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 60.0
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 61.5
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 3.0e-09 64.7 66 65.2
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 61.5
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 60.0
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 63.1
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 58.5
Lalb_Chr12g0205751 Lupinus albus HOM05D005524 ORTHO05D005392 3.9e-09 64.3 64 56.2
Manes.10G145300 Manihot esculenta HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 66.2
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 3.9e-09 64.3 65 61.5
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 60.0
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 60.0
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 58.5
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 58.5
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 60.0
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.1e-09 63.9 65 61.5
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 6.7e-09 63.5 65 58.5
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 6.7e-09 63.5 65 60.0
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 6.7e-09 63.5 65 60.0
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 6.7e-09 63.5 65 60.0
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 6.7e-09 63.5 66 62.1
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 6.7e-09 63.5 65 60.0
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.7e-09 63.2 65 63.1
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.1e-08 62.8 66 60.6
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 1.5e-08 62.4 65 61.5
Cfa010746 Carpinus fangiana HOM05D005524 ORTHO05D005392 1.5e-08 62.4 70 58.6
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.9e-08 62.0 65 61.5
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 1.9e-08 62.0 65 58.5
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 2.5e-08 61.6 65 56.9
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 3.3e-08 61.2 63 60.3
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 5.7e-08 60.5 65 55.4
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 5.7e-08 60.5 65 56.9
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 5.7e-08 60.5 65 56.9
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 5.7e-08 60.5 65 56.9
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 7.4e-08 60.1 65 64.6
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.3e-07 59.3 65 60.0
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.3e-07 59.3 65 53.8
COL.COLO4_28709 Corchorus olitorius HOM05D005524 ORTHO05D005392 1.3e-07 59.3 65 66.2
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 2.2e-07 58.5 66 56.1
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 2.8e-07 58.2 65 63.1
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.8e-07 58.2 65 55.4
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 4.8e-07 57.4 65 55.4
DCAR_029662 Daucus carota HOM05D005524 ORTHO05D005392 4.8e-07 57.4 68 58.8
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 4.8e-07 57.4 79 50.6
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 4.8e-07 57.4 65 56.9
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 4.8e-07 57.4 63 60.3
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.2e-07 56.6 65 58.5
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.2e-07 56.6 65 55.4
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 8.2e-07 56.6 79 49.4
Lalb_Chr01g0008091 Lupinus albus HOM05D005524 ORTHO05D005392 8.2e-07 56.6 63 65.1
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-06 56.2 65 52.3
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 1.4e-06 55.8 65 66.2
Lalb_Chr01g0015271 Lupinus albus HOM05D005524 ORTHO05D005392 1.4e-06 55.8 62 51.6
QL04p005498 Quercus lobata HOM05D005524 ORTHO05D005392 1.8e-06 55.5 68 63.2
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.4e-06 55.1 65 58.5
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 2.4e-06 55.1 65 53.8
Zm00001eb252840 Zea mays HOM05D054024 ORTHO05D005392 3.1e-06 54.7 65 58.5
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 4.1e-06 54.3 63 54.0
Nn2g15425 Nelumbo nucifera HOM05D005524 ORTHO05D005392 4.1e-06 54.3 67 64.2
TPR.G3828 Trifolium pratense HOM05D005524 ORTHO05D005392 4.1e-06 54.3 62 59.7
Lalb_Chr01g0017541 Lupinus albus HOM05D005524 ORTHO05D005392 6.9e-06 53.5 62 61.3
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 6.9e-06 53.5 63 55.6
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 6.9e-06 53.5 65 52.3


User provided reference genes

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