Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1645.6 808 100.0
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1451.8 811 87.5
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1424.1 809 84.8
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1414.8 810 84.6
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1406.0 810 84.7
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1405.6 809 83.4
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1403.7 811 83.5
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1396.3 811 84.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1395.9 810 84.4
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1395.6 810 83.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1395.6 810 83.5
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1391.7 809 83.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1388.6 810 83.0
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1388.6 810 83.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1387.1 810 82.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1380.9 810 83.2
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1377.5 814 82.2
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 810 83.0
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 810 83.1
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1373.2 814 82.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1372.8 835 82.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1371.7 809 82.1
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1370.1 807 81.8
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1369.8 814 81.9
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1369.8 811 81.9
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1369.8 820 81.3
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1368.2 811 81.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 810 82.8
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 810 82.6
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1365.9 810 82.1
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 810 82.0
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1363.2 805 81.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1360.1 816 81.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1356.3 813 81.2
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1356.3 806 81.0
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1356.3 811 80.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1352.8 810 81.1
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1352.4 813 80.9
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1352.0 809 80.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1351.3 811 81.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1348.2 806 81.0
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1345.1 811 81.3
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1342.4 809 80.1
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1337.0 806 80.3
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1330.1 811 79.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1328.2 808 79.6
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1326.6 810 79.9
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1325.8 890 74.5
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 822 77.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1319.3 811 79.9
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1314.3 810 78.4
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1312.7 809 78.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1312.0 810 79.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1302.7 810 77.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1298.5 811 78.2
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1296.2 808 76.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1294.6 808 76.2
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1292.7 808 76.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 809 75.9
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 808 78.0
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 808 75.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1287.7 800 78.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 809 75.6
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 807 76.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 807 76.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1283.1 809 76.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 808 75.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 808 75.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 808 75.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1276.2 808 75.2
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 809 75.3
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 811 76.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 962 69.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 810 75.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 809 76.3
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1273.5 809 75.0
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 786 78.9
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 805 76.1
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 809 76.0
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 808 75.1
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 800 76.0
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 809 74.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 805 75.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 809 75.6
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 813 74.8
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 809 75.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 809 75.4
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 812 75.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1235.7 809 73.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 811 74.2
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1234.6 864 69.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1225.7 810 75.9
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 871 69.7
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1221.5 806 74.2
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 860 69.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 807 71.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 811 71.5
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 811 73.6
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 809 72.2
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 915 67.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1191.0 767 75.1
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 810 71.6
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 810 69.8
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1177.2 824 71.0
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 812 69.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1162.5 966 63.8
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 783 72.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1144.8 809 70.5
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1113.6 816 66.1
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1093.2 810 67.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1092.4 814 70.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1088.9 820 65.2
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.0e-295 1020.0 605 83.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.9e-295 1018.5 802 61.7
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.5e-280 968.4 805 61.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.0e-251 872.8 783 61.0
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.1e-189 666.8 381 84.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.1e-188 662.9 858 43.5
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.7e-166 589.0 833 40.7
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.8e-159 567.4 810 42.5
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.2e-149 533.9 852 38.7
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.4e-148 529.3 937 34.5
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 8.1e-120 435.6 417 54.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.7e-117 427.9 316 66.8
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.5e-115 420.2 360 63.3
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 8.9e-111 405.6 244 78.7
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.3e-87 326.6 239 68.2
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.0e-74 284.3 201 67.7
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.2e-68 264.2 175 70.9
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 3.2e-60 237.7 671 29.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 8.5e-53 213.0 141 76.6
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 3.9e-50 204.1 194 60.8
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.4e-41 174.1 90 86.7
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 9.7e-41 172.9 103 80.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 3.2e-36 157.9 112 67.9
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.2e-35 156.0 262 41.6
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.6e-35 154.5 99 76.8
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.4e-34 152.5 97 75.3
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.3e-32 146.0 121 63.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 8.6e-29 133.3 180 44.4
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 7.2e-28 130.2 119 55.5
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 9.5e-28 129.8 113 51.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.6e-27 127.9 80 75.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 8.8e-26 123.2 190 42.6
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 5.7e-25 120.6 175 40.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.8e-24 118.2 264 31.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 5.4e-23 114.0 109 56.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.7e-21 109.0 69 76.8
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.8e-19 101.7 59 84.7
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.8e-18 99.0 147 45.6
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 8.9e-18 96.7 68 73.5
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.0e-17 95.5 73 65.8
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.9e-16 90.9 50 78.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.4e-16 90.5 43 93.0
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 8.6e-13 80.1 60 73.3
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 2.8e-11 75.1 59 52.5
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.8e-10 72.4 129 38.0
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.6e-09 68.6 76 52.6
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.2e-08 65.5 435 21.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.1e-07 63.2 57 64.9
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.9e-07 62.4 57 64.9
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.9e-07 62.4 57 64.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 66.7
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 7.0e-07 60.5 57 61.4
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 64.8
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 64.8
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 64.8
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 64.8
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.7e-06 58.5 34 82.4
CSS0022525 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 4.6e-06 57.8 120 35.8
Gohir.A01G092100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.6e-06 57.8 79 39.2
Gohir.D01G062300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.6e-06 57.8 79 39.2
Gorai.002G100900 Gossypium raimondii HOM05D000747 ORTHO05D001683 4.6e-06 57.8 79 39.2
Medtr4g094705 Medicago truncatula HOM05D000747 ORTHO05D001683 6.0e-06 57.4 98 38.8


User provided reference genes

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