Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.6e-39 163.3 80 100.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 8.2e-25 116.7 80 73.8
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.4e-24 115.9 80 73.8
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 5.3e-24 114.0 80 71.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.9e-24 113.6 80 72.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 6.9e-24 113.6 80 72.5
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.5e-23 110.9 80 71.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 5.9e-23 110.5 85 67.1
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-22 109.8 80 71.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.0e-22 109.8 82 69.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.7e-22 109.0 81 69.1
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.7e-22 109.0 81 71.6
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 5.0e-22 107.5 80 70.0
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.0e-22 107.5 80 67.5
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.5e-22 106.7 80 67.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-21 105.9 81 70.4
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.4e-21 105.9 80 65.0
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.5e-21 105.1 81 70.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.5e-21 105.1 80 68.8
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.5e-21 105.1 80 68.8
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.2e-21 104.8 79 67.1
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.2e-21 104.8 85 63.5
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 4.2e-21 104.4 80 70.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 5.5e-21 104.0 81 69.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 5.5e-21 104.0 80 67.5
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.4e-21 103.2 79 68.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 66.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 67.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.7e-20 101.7 81 67.9
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.7e-20 100.9 82 63.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 6.1e-20 100.5 80 63.8
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.1e-20 100.5 75 69.3
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 6.1e-20 100.5 80 66.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 6.1e-20 100.5 81 65.4
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 7.9e-20 100.1 79 64.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-19 99.8 81 64.2
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.4e-19 99.4 80 62.5
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.9e-19 97.8 80 65.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 3.9e-19 97.8 80 63.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.7e-19 97.1 75 65.3
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 8.8e-19 96.7 80 67.5
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.8e-19 96.7 85 63.5
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.1e-18 96.3 76 67.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.5e-18 95.9 80 62.5
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.6e-18 95.1 85 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.6e-18 95.1 78 60.3
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.3e-18 94.7 80 58.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 4.4e-18 94.4 75 64.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-18 94.4 74 67.6
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 5.7e-18 94.0 75 64.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 9.7e-18 93.2 75 65.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 9.7e-18 93.2 75 65.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 9.7e-18 93.2 75 68.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.3e-17 92.8 80 60.0
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.7e-17 92.4 80 60.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.8e-17 91.7 75 60.0
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-17 90.9 91 58.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 6.3e-17 90.5 82 61.0
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 8.2e-17 90.1 77 61.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 8.2e-17 90.1 80 62.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.1e-16 89.7 87 58.6
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.4e-16 89.4 91 57.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.8e-16 89.0 76 61.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.4e-16 88.6 81 61.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-16 88.2 83 59.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.1e-16 88.2 83 59.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.1e-16 87.8 80 57.5
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 4.1e-16 87.8 89 53.9
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 9.1e-16 86.7 83 59.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 9.1e-16 86.7 86 53.5
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.1e-16 86.7 81 58.0
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.2e-15 86.3 77 62.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.6e-15 85.9 76 61.8
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.6e-15 85.1 80 60.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.5e-15 84.7 85 54.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.5e-15 84.7 91 54.9
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.5e-15 84.3 76 57.9
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 4.5e-15 84.3 75 58.7
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 7.7e-15 83.6 78 59.0
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.7e-15 83.6 75 58.7
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 7.7e-15 83.6 89 55.1
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.3e-14 82.8 68 58.8
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.7e-14 82.4 84 57.1
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.7e-14 82.4 79 59.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-14 82.0 84 57.1
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.2e-14 82.0 85 54.1
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.2e-14 82.0 74 55.4
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.9e-14 81.6 74 56.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.9e-14 81.6 77 59.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.9e-14 81.6 77 59.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.0e-14 80.9 85 54.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 5.0e-14 80.9 76 57.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 8.5e-14 80.1 80 56.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 84 56.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-13 79.0 80 55.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.9e-13 79.0 83 56.6
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.5e-13 78.6 76 56.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.2e-13 78.2 61 67.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.2e-13 78.2 82 53.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.2e-13 77.8 74 56.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.2e-13 77.8 80 57.5
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 5.5e-13 77.4 74 56.8
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 5.5e-13 77.4 79 54.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.2e-13 77.0 82 56.1
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.2e-13 77.0 78 59.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 9.4e-13 76.6 80 55.0
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 9.4e-13 76.6 77 57.1
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.6e-12 75.9 78 57.7
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.1e-12 75.5 87 49.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.1e-12 75.5 83 55.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.7e-12 75.1 73 54.8
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.6e-12 74.7 86 51.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.7e-12 74.3 79 50.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.1e-12 73.9 81 54.3
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 6.1e-12 73.9 79 50.6
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 8.0e-12 73.6 75 54.7
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 8.0e-12 73.6 79 50.6
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.0e-12 73.6 78 53.8
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.0e-12 73.6 75 56.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-11 73.2 73 56.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.4e-11 72.8 71 53.5
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.4e-11 72.8 77 54.5
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 79 50.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.8e-11 72.4 78 53.8
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.3e-11 72.0 79 50.6
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-11 72.0 86 51.2
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.3e-11 72.0 74 54.1
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.0e-11 71.6 78 55.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.2e-11 70.9 82 50.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 5.2e-11 70.9 81 54.3
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 5.2e-11 70.9 70 57.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 6.7e-11 70.5 91 50.5
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.7e-11 70.5 82 50.0
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.8e-11 70.1 93 48.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 8.8e-11 70.1 81 51.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 69 52.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.1e-10 69.7 69 52.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 2.0e-10 68.9 78 53.8
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.0e-10 68.9 95 48.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.6e-10 68.6 79 50.6
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 2.6e-10 68.6 82 51.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-10 68.6 81 49.4
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.3e-10 68.2 81 50.6
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.3e-10 68.2 80 51.2
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 4.4e-10 67.8 87 48.3
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 9.7e-10 66.6 78 55.1
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-09 66.2 78 52.6
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.7e-09 65.9 76 51.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.2e-09 65.5 81 51.9
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 2.2e-09 65.5 81 49.4
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-09 65.1 79 46.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.3e-09 63.9 76 50.0
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.2e-09 63.5 81 48.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.2e-09 63.5 78 48.7
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.3e-08 60.8 77 42.9
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.3e-08 60.8 77 45.5
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 7.0e-08 60.5 57 57.9
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 9.1e-08 60.1 84 42.9
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.6e-07 59.3 89 46.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.7e-07 58.5 77 49.4
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.7e-07 57.0 50 64.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-06 56.6 86 45.3
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.9e-06 55.1 82 43.9
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 6.5e-06 53.9 84 42.9
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 6.5e-06 53.9 84 44.0


User provided reference genes

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