Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.2e-300 1033.9 511 100.0
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.1e-239 833.2 508 81.9
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.0e-237 826.6 507 80.5
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 2.1e-190 669.5 504 67.3
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 2.3e-189 666.0 498 67.1
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 8.8e-189 664.1 516 67.2
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 6.3e-187 657.9 506 66.0
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 6.3e-187 657.9 507 67.3
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.6e-185 653.3 509 64.8
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 2.0e-185 652.9 509 65.0
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.9e-184 649.0 499 67.7
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 3.8e-184 648.7 440 73.6
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 4.2e-183 645.2 509 63.9
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.2e-182 643.7 511 65.2
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 1.2e-182 643.7 495 67.1
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.6e-182 643.3 504 64.1
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.7e-182 642.5 511 65.8
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.7e-182 641.7 507 64.3
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 4.7e-182 641.7 488 68.0
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 1.8e-181 639.8 440 72.3
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 4.0e-181 638.6 511 65.0
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 8.8e-181 637.5 497 65.8
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 8.8e-181 637.5 511 64.2
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 2.6e-180 636.0 506 65.8
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 5.7e-180 634.8 451 70.3
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 7.5e-180 634.4 511 62.6
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.7e-179 632.1 502 65.3
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 4.8e-179 631.7 502 65.3
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.0e-177 626.3 502 64.9
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.7e-177 625.9 494 62.6
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.5e-177 625.2 502 64.7
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.3e-176 623.6 515 63.3
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 2.2e-176 622.9 497 63.8
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 3.8e-176 622.1 512 62.9
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 3.8e-176 622.1 512 62.9
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 5.0e-176 621.7 504 63.1
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 8.5e-176 620.9 492 63.2
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 9.5e-175 617.5 511 61.8
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 3.6e-174 615.5 512 62.3
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 6.1e-174 614.8 512 62.5
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 6.1e-174 614.8 492 62.0
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 1.8e-173 613.2 512 62.5
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.8e-173 613.2 502 63.7
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 3.0e-173 612.5 495 63.4
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 4.0e-173 612.1 512 61.9
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 5.2e-173 611.7 512 62.1
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 1.5e-172 610.1 509 63.5
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 5.7e-172 608.2 487 62.4
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.3e-171 607.1 555 58.6
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 2.2e-171 606.3 494 60.5
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 3.7e-171 605.5 508 60.6
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 4.9e-171 605.1 505 62.2
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.3e-171 604.7 502 63.9
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 7.0e-170 601.3 497 64.0
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 1.2e-169 600.5 444 68.0
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 1.6e-169 600.1 512 61.1
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 2.0e-169 599.7 492 62.4
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.0e-168 597.4 494 60.9
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.0e-168 597.4 497 64.0
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.7e-168 596.7 489 60.9
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 1.7e-168 596.7 511 62.6
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 5.0e-168 595.1 428 66.8
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 6.6e-168 594.7 494 61.3
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 6.6e-168 594.7 497 63.8
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 4.3e-167 592.0 491 60.9
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 9.5e-167 590.9 409 70.7
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.1e-166 589.7 487 60.6
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 2.1e-166 589.7 496 61.3
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.3e-165 586.3 490 63.9
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.0e-165 585.9 511 60.3
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 8.9e-165 584.3 495 61.8
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 7.5e-164 581.3 506 62.8
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 1.1e-162 577.4 509 60.5
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.4e-162 577.0 496 60.9
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 7.8e-161 571.2 503 60.6
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 1.0e-160 570.9 462 61.9
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 4.3e-159 565.5 462 64.9
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 9.5e-159 564.3 403 70.0
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 3.6e-158 562.4 491 59.5
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 6.2e-158 561.6 496 61.1
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 8.0e-158 561.2 513 57.1
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 2.0e-156 556.6 514 58.9
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 8.3e-155 551.2 521 56.6
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.1e-154 550.8 496 59.1
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.9e-154 550.1 502 58.4
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 7.0e-154 548.1 500 56.0
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 2.7e-153 546.2 484 59.3
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 5.0e-152 542.0 484 60.1
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 6.6e-152 541.6 463 59.6
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.5e-151 540.4 529 54.4
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.5e-151 540.4 501 56.5
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.1e-150 536.6 463 59.4
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 2.7e-145 519.6 476 58.0
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 1.0e-144 517.7 484 57.4
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 8.6e-144 514.6 499 53.7
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.3e-143 512.7 460 58.7
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 4.3e-143 512.3 460 58.9
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 1.1e-141 507.7 489 53.8
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.0e-141 505.8 391 66.8
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.9e-139 499.6 402 62.2
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.4e-138 496.5 402 61.9
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.2e-132 477.6 347 68.0
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 7.6e-132 474.9 356 65.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 1.3e-131 474.2 357 67.2
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 2.7e-129 466.5 447 55.9
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-128 463.8 345 67.2
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 6.4e-123 445.3 347 63.1
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 2.5e-106 390.2 405 55.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 5.7e-103 379.0 281 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.1e-93 348.2 493 41.6
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 1.0e-91 341.7 213 78.9
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.3e-91 341.3 247 68.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 1.3e-91 341.3 210 81.0
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.7e-83 314.3 427 42.2
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.8e-83 313.2 321 53.6
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 4.5e-76 289.7 199 70.4
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 3.8e-75 286.6 424 42.0
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.5e-74 284.6 459 38.3
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.5e-55 221.5 184 59.8
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.7e-51 208.0 216 51.9
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.6e-51 206.1 169 60.9
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.1e-50 205.3 453 31.3
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 9.2e-45 185.7 198 51.0
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 3.9e-43 180.3 169 55.0
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.9e-38 164.1 335 34.3
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.9e-38 163.3 272 39.7
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.1e-37 162.2 236 38.1
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.6e-33 148.3 111 64.9
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.6e-33 147.1 120 60.0
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.4e-31 140.6 114 59.6
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.1e-21 109.0 75 69.3
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 9.2e-21 105.9 78 60.3
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.5e-20 104.0 110 47.3
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 1.2e-15 89.0 87 55.2
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.1e-13 82.4 67 59.7


User provided reference genes

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