Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 3.5e-113 411.8 225 100.0
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 1.1e-63 247.3 228 69.3
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.5e-63 246.9 228 68.4
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 7.3e-63 244.6 229 65.9
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.1e-55 220.7 234 61.1
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.9e-55 219.9 234 61.1
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 2.7e-33 146.4 235 44.7
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.5e-33 146.0 239 43.5
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 7.9e-33 144.8 234 42.3
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.0e-32 144.4 240 42.5
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.7e-32 141.7 214 43.9
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.6e-30 137.1 235 46.0
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 2.8e-30 136.3 236 46.2
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 8.2e-30 134.8 238 47.5
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 1.8e-29 133.7 238 45.0
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.8e-29 133.7 260 40.8
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.2e-28 131.0 235 43.8
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 3.4e-28 129.4 218 43.1
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 3.4e-28 129.4 238 39.9
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 7.7e-28 128.3 225 41.8
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 1.0e-27 127.9 229 43.2
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.3e-27 127.5 237 42.6
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.8e-27 125.9 236 41.9
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 3.8e-27 125.9 237 46.0
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 1.1e-26 124.4 215 42.8
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 3.2e-26 122.9 191 50.3
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 7.2e-26 121.7 269 37.5
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.2e-26 121.7 213 48.8
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.6e-25 120.6 215 44.2
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.6e-25 120.6 233 38.6
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 1.8e-24 117.1 254 38.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 2.3e-24 116.7 241 36.5
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 8.8e-24 114.8 233 39.9
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-23 114.4 233 39.9
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.1e-23 114.4 233 39.9
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.5e-23 114.0 161 48.4
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 2.0e-23 113.6 228 41.7
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.3e-23 112.8 252 38.5
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 5.7e-23 112.1 224 37.1
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 7.4e-23 111.7 214 40.7
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 1.7e-22 110.5 257 38.5
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 2.2e-22 110.2 171 50.9
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.2e-22 110.2 244 38.9
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.2e-22 110.2 230 40.9
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.8e-22 109.8 209 45.9
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 2.8e-22 109.8 271 32.8
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 3.7e-22 109.4 247 38.1
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 4.8e-22 109.0 242 40.1
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 4.8e-22 109.0 263 35.7
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.1e-21 107.8 241 35.7
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 1.4e-21 107.5 210 37.6
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 3.1e-21 106.3 199 42.7
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 4.1e-21 105.9 235 39.1
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 4.1e-21 105.9 208 36.5
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.3e-21 105.5 258 37.6
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.3e-21 105.5 217 43.8
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 5.3e-21 105.5 246 38.2
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.2e-20 104.4 257 36.2
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 2.6e-20 103.2 237 37.1
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 2.6e-20 103.2 250 36.8
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 7.7e-20 101.7 227 42.3
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.0e-19 101.3 252 35.7
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.3e-19 100.9 223 37.2
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.7e-19 100.5 253 38.3
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.9e-19 99.8 268 34.7
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.8e-19 99.4 255 36.9
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 3.8e-19 99.4 230 35.2
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 3.8e-19 99.4 233 42.9
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-19 98.6 268 37.3
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-19 98.6 268 37.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 8.5e-19 98.2 235 38.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 1.1e-18 97.8 208 37.5
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.9e-18 97.1 244 37.7
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 3.2e-18 96.3 226 42.0
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 3.2e-18 96.3 205 37.1
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 4.2e-18 95.9 251 37.5
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.2e-17 94.4 259 37.1
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 1.6e-17 94.0 171 43.9
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 2.7e-17 93.2 177 42.9
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 3.6e-17 92.8 139 45.3
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.6e-17 92.8 229 38.4
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 6.1e-17 92.0 240 35.0
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 2.3e-16 90.1 188 41.5
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 2.3e-16 90.1 252 36.9
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 3.0e-16 89.7 238 37.8
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 3.9e-16 89.4 240 36.2
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 3.9e-16 89.4 184 45.1
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.1e-16 89.0 190 34.2
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.7e-16 88.6 188 37.8
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 6.7e-16 88.6 252 35.7
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 1.1e-15 87.8 236 34.3
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.1e-15 87.8 201 44.3
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.1e-15 87.8 253 33.6
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.1e-15 87.8 237 39.2
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.5e-15 87.4 213 33.8
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 2.0e-15 87.0 245 42.4
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 2.6e-15 86.7 234 30.8
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 4.4e-15 85.9 190 33.2
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 1.7e-14 84.0 142 38.7
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.7e-14 84.0 257 33.5
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.8e-14 83.2 121 43.8
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 2.8e-14 83.2 253 37.9
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 4.8e-14 82.4 229 36.7
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 4.8e-14 82.4 247 34.0
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 1.1e-13 81.3 242 33.9
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 1.1e-13 81.3 243 36.6
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.4e-13 80.9 126 42.1
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.4e-13 80.9 219 32.4
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.8e-13 80.5 252 30.6
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 1.8e-13 80.5 158 39.9
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.8e-13 80.5 169 39.6
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 5.3e-13 79.0 133 39.8
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.2e-12 77.8 198 37.9
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.2e-12 77.8 148 43.9
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.6e-12 77.4 144 37.5
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 2.0e-12 77.0 161 38.5
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.6e-12 76.6 120 42.5
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 5.9e-12 75.5 141 42.6
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 5.9e-12 75.5 136 39.7
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 5.9e-12 75.5 210 31.4
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 5.9e-12 75.5 162 35.2
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 1.0e-11 74.7 145 35.9
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 1.0e-11 74.7 95 51.6
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 1.0e-11 74.7 149 38.3
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.0e-11 74.7 202 32.7
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 1.3e-11 74.3 269 31.6
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.7e-11 73.9 145 38.6
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.7e-11 73.9 206 31.1
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 3.8e-11 72.8 156 34.0
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 6.5e-11 72.0 156 41.7
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 6.5e-11 72.0 164 37.8
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 8.5e-11 71.6 153 35.3
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 1.9e-10 70.5 241 31.1
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 2.5e-10 70.1 269 31.2
MBI14_g07165_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 7.2e-10 68.6 148 36.5
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 1.6e-09 67.4 137 40.9
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 1.6e-09 67.4 223 36.8
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 2.1e-09 67.0 143 37.1
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 6.1e-09 65.5 304 26.6
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 8.0e-09 65.1 68 55.9
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 1.4e-08 64.3 174 39.1
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.8e-08 63.9 111 36.9
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 1.8e-08 63.9 106 42.5
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 2.3e-08 63.5 147 36.1
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 2.3e-08 63.5 84 48.8
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 2.3e-08 63.5 149 34.9
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 3.0e-08 63.2 219 34.7
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 3.0e-08 63.2 137 39.4
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 4.0e-08 62.8 81 42.0
MBI14_g24307_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 5.2e-08 62.4 147 34.0
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 6.7e-08 62.0 88 38.6
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 6.7e-08 62.0 97 42.3
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 6.7e-08 62.0 202 30.7
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.1e-07 61.2 157 35.0
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.1e-07 61.2 117 39.3
Lsat_1_v5_gn_2_110560 Lactuca sativa HOM05D000437 ORTHO05D003325 1.5e-07 60.8 66 53.0
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 1.5e-07 60.8 176 33.5
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.4e-07 59.3 94 41.5
SEGI_11879 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 4.4e-07 59.3 127 33.9
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 5.7e-07 58.9 66 47.0
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 9.7e-07 58.2 53 50.9
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.3e-06 57.8 172 37.8
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 1.7e-06 57.4 114 39.5
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 1.7e-06 57.4 84 36.9
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 1.7e-06 57.4 114 39.5
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 1.7e-06 57.4 84 36.9
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 1.7e-06 57.4 114 39.5
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.2e-06 57.0 106 34.9
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.2e-06 57.0 121 36.4
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 2.2e-06 57.0 69 43.5
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 2.8e-06 56.6 81 40.7
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 2.8e-06 56.6 68 48.5
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 2.8e-06 56.6 90 45.6
HanXRQChr14g0459281 Helianthus annuus HOM05D004206 ORTHO05D003325 2.8e-06 56.6 60 55.0
SalBow8G2190 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.8e-06 56.6 81 45.7
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.7e-06 56.2 135 37.0
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 4.8e-06 55.8 132 37.9
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 4.8e-06 55.8 149 32.9
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 6.3e-06 55.5 69 42.0
Zm00001eb149900 Zea mays HOM05D033995 ORTHO05D003325 6.3e-06 55.5 67 44.8
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 8.2e-06 55.1 70 42.9
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 8.2e-06 55.1 70 42.9
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 8.2e-06 55.1 98 35.7
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 8.2e-06 55.1 54 48.1
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 8.2e-06 55.1 110 36.4


User provided reference genes

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