Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.8e-260 901.0 451 100.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 3.9e-225 784.6 451 85.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 2.6e-208 728.8 451 80.0
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 5.7e-208 727.6 452 81.2
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.7e-207 726.1 472 76.5
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.6e-205 719.5 449 79.3
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 5.9e-205 717.6 451 75.2
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 6.1e-202 707.6 454 78.6
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.4e-201 706.4 447 78.7
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 2.0e-200 702.6 451 76.5
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 5.7e-200 701.0 452 73.9
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 7.5e-200 700.7 451 74.5
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.3e-199 699.9 446 75.8
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.4e-198 696.4 451 74.9
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 7.0e-198 694.1 454 75.3
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 2.7e-197 692.2 451 77.4
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 3.5e-197 691.8 454 74.4
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 8.6e-196 687.2 449 75.1
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.6e-194 682.9 449 74.4
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 6.1e-194 681.0 449 74.4
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.4e-193 679.9 451 76.1
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 3.0e-193 678.7 457 74.0
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.7e-191 672.9 451 74.7
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 4.1e-190 668.3 451 71.4
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 5.4e-190 667.9 452 72.3
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 5.4e-190 667.9 446 72.6
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 6.0e-189 664.5 465 71.0
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 7.8e-189 664.1 456 70.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.3e-188 662.5 464 68.8
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.5e-187 659.8 450 72.7
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.9e-187 659.4 451 72.1
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 6.2e-186 654.4 451 70.3
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 1.4e-185 653.3 453 72.6
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.8e-185 652.9 453 72.2
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.8e-185 652.9 491 67.2
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 6.8e-185 651.0 454 72.7
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.3e-183 646.7 445 71.0
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.7e-183 646.4 454 72.0
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 1.1e-182 643.7 497 64.6
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.4e-182 643.3 453 71.1
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 2.4e-182 642.5 452 71.0
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.2e-181 640.2 451 68.1
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.5e-181 638.6 445 71.0
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 1.0e-180 637.1 453 68.0
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 5.0e-180 634.8 452 70.4
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.6e-180 634.4 452 70.4
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 9.5e-179 630.6 450 66.4
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 2.1e-178 629.4 453 66.4
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 2.8e-178 629.0 453 66.4
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 2.8e-178 629.0 453 66.4
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 3.6e-178 628.6 446 71.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 6.2e-178 627.9 446 71.1
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 6.2e-178 627.9 416 72.8
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.1e-177 627.1 462 67.5
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 2.0e-176 622.9 453 66.2
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 4.9e-175 618.2 458 66.2
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-174 617.1 447 66.4
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 5.1e-172 608.2 489 63.0
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 8.6e-172 607.4 475 64.6
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 2.6e-168 595.9 527 56.9
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 4.4e-168 595.1 529 59.5
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 5.8e-168 594.7 430 70.2
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.8e-168 594.7 555 56.9
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.3e-167 593.6 430 67.4
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 4.9e-167 591.7 450 66.0
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 9.6e-163 577.4 446 61.4
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.5e-160 570.1 450 63.8
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.0e-160 569.7 450 60.9
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.4e-160 568.5 472 62.1
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.7e-159 566.6 402 71.6
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 3.8e-159 565.5 465 60.6
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.4e-158 562.8 450 60.0
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 6.6e-156 554.7 436 63.5
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 5.3e-153 545.0 447 62.0
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 7.6e-152 541.2 430 61.9
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.7e-146 522.3 451 59.4
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 3.2e-142 509.2 405 62.2
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 7.1e-142 508.1 336 72.9
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.5e-141 505.8 486 56.8
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.8e-138 496.1 356 69.9
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.7e-135 486.9 476 54.0
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.1e-126 457.6 484 47.5
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.3e-122 444.1 410 56.6
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.2e-122 443.4 395 61.5
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 2.2e-122 443.4 463 51.2
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.0e-116 424.5 451 53.2
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 2.0e-115 420.2 402 57.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 4.8e-114 415.6 460 45.0
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.5e-112 410.6 300 66.7
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 8.8e-108 394.8 457 44.4
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.1e-107 394.4 457 44.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.3e-106 388.7 338 62.4
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 1.5e-102 377.5 210 82.4
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 5.3e-97 359.0 201 81.6
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 7.7e-96 355.1 215 77.2
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.3e-95 354.4 277 63.9
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 8.0e-93 345.1 201 80.6
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.0e-91 340.5 262 65.3
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 9.8e-91 338.2 200 78.5
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.4e-89 334.3 173 89.0
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 1.2e-83 314.7 231 66.2
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 7.8e-80 302.0 239 62.3
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.3e-79 301.2 235 63.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.3e-78 295.4 228 58.3
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.3e-76 290.4 169 75.1
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 9.8e-75 285.0 250 60.4
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 4.9e-74 282.7 263 57.8
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.9e-73 280.8 151 86.8
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.1e-68 263.5 235 55.3
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.2e-67 261.5 195 67.7
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.4e-65 254.6 138 85.5
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 5.1e-63 246.1 201 59.7
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.3e-62 243.4 212 57.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.6e-61 241.1 213 56.3
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 1.3e-58 231.5 181 64.1
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 2.9e-50 203.8 194 55.2
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 3.2e-49 200.3 338 36.7
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 4.4e-43 179.9 97 86.6
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.7e-39 165.6 88 80.7
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.6e-37 161.4 298 37.2
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.6e-32 144.8 274 31.4
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.3e-30 137.1 85 74.1
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.0e-26 125.6 246 37.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.9e-26 123.2 70 75.7
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 4.0e-20 103.6 267 30.0
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.1e-17 95.5 52 82.7
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.6e-16 91.7 57 80.7
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 6.3e-13 79.7 53 67.9
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 3.1e-12 77.4 352 27.6
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 3.6e-08 63.9 50 58.0


User provided reference genes

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