Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.9e-67 256.9 125 100.0
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 4.7e-51 204.5 125 78.4
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 6.7e-50 200.7 125 77.6
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.3e-49 198.4 127 76.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.3e-48 194.1 125 76.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.9e-45 185.3 121 71.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.2e-44 181.4 121 69.4
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.1e-43 179.1 129 69.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.7e-40 168.3 129 65.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 5.4e-39 164.5 124 66.1
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.1e-39 163.7 122 63.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 7.7e-38 160.6 125 65.6
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 3.8e-37 158.3 132 62.1
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.6e-35 151.8 110 66.4
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.0e-34 150.2 132 62.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.0e-34 150.2 128 60.2
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.6e-33 145.6 108 60.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.6e-33 145.6 106 65.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.4e-33 145.2 132 59.8
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.4e-33 145.2 132 62.1
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.4e-33 144.8 108 59.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.4e-33 144.8 108 59.3
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.8e-32 142.1 129 56.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.8e-32 142.1 113 63.7
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 4.9e-32 141.4 118 64.4
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 8.3e-32 140.6 106 64.2
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-31 139.8 132 56.1
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.4e-31 139.0 128 58.6
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.7e-30 135.6 116 60.3
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 5.9e-30 134.4 109 61.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.7e-29 132.9 107 58.9
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.3e-29 132.5 121 51.2
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.9e-29 132.1 104 59.6
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 5.0e-29 131.3 121 51.2
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.6e-28 127.9 129 51.9
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.2e-27 126.7 116 56.9
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-27 125.9 108 61.1
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.1e-27 125.9 115 61.7
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.8e-27 125.6 114 55.3
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-27 125.2 119 59.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 6.1e-27 124.4 119 59.7
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-26 123.6 108 60.2
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 4.0e-26 121.7 122 52.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.8e-26 120.9 108 59.3
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 6.8e-26 120.9 121 52.1
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.4e-25 118.6 124 51.6
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.4e-25 118.2 117 56.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.7e-24 116.3 111 52.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.9e-24 115.5 113 54.0
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.7e-24 115.2 106 48.1
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.9e-24 114.8 119 49.6
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.1e-23 113.6 109 53.2
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.1e-23 113.6 111 55.9
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.4e-23 113.2 114 55.3
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.9e-23 112.8 120 48.3
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 4.1e-23 111.7 107 49.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.4e-23 111.3 118 54.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 9.2e-23 110.5 108 50.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-22 110.2 109 54.1
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-22 110.2 109 54.1
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.0e-22 109.4 108 56.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.0e-22 109.4 107 55.1
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.7e-22 109.0 109 48.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.5e-22 108.6 109 46.8
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-22 108.6 123 45.5
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.8e-22 107.5 126 50.8
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.7e-21 106.3 118 49.2
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 8.6e-21 104.0 126 51.6
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.1e-20 103.6 114 52.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.5e-20 103.2 110 52.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-20 102.8 119 48.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.5e-20 102.4 108 54.6
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.5e-20 102.4 111 50.5
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 4.3e-20 101.7 105 49.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.6e-20 101.3 120 45.0
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 5.6e-20 101.3 114 51.8
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-20 100.5 119 47.9
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.6e-19 99.8 122 43.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.1e-19 99.4 119 47.9
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 4.7e-19 98.2 120 46.7
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.2e-19 97.8 117 51.3
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-18 97.1 120 46.7
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.8e-18 96.3 107 53.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.0e-17 92.8 108 45.4
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.6e-17 92.4 119 45.4
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 4.4e-17 91.7 108 47.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 9.8e-17 90.5 110 42.7
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.3e-16 90.1 95 54.7
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.7e-16 89.7 104 42.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.2e-16 89.4 120 40.8
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 2.9e-16 89.0 119 37.0
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 6.4e-16 87.8 107 47.7
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.4e-15 86.7 110 43.6
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-15 86.7 107 44.9
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 3.2e-15 85.5 108 42.6
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 5.4e-15 84.7 110 42.7
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 7.0e-15 84.3 118 43.2
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.2e-14 83.6 104 48.1
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.6e-14 83.2 106 43.4
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-14 83.2 108 43.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.1e-14 82.8 132 42.4
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 3.5e-14 82.0 119 40.3
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.0e-14 81.3 112 38.4
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.8e-14 80.9 123 39.8
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.0e-13 80.5 108 43.5
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 1.0e-13 80.5 121 36.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.0e-13 80.5 123 39.8
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.0e-13 80.5 114 43.0
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.3e-13 80.1 120 42.5
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.9e-13 78.6 124 36.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 5.1e-13 78.2 115 41.7
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 5.1e-13 78.2 106 42.5
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-12 77.0 124 35.5
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-12 77.0 129 37.2
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.5e-12 76.6 133 38.3
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.9e-12 76.3 129 38.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.3e-12 75.5 100 46.0
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 5.6e-12 74.7 112 42.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.6e-12 74.7 126 37.3
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 9.5e-12 73.9 113 39.8
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.2e-11 73.6 115 40.9
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.2e-11 73.6 115 40.9
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.2e-11 73.6 115 40.9
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.2e-11 73.6 111 37.8
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.1e-11 72.8 119 33.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.8e-11 72.4 108 43.5
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.8e-11 72.4 108 43.5
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.6e-11 72.0 106 40.6
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.7e-11 71.6 97 44.3
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 4.7e-11 71.6 120 35.0
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 6.2e-11 71.2 121 38.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 1.1e-10 70.5 112 38.4
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 1.1e-10 70.5 104 41.3
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.3e-10 69.3 105 35.2
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 6.8e-10 67.8 105 41.9
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.9e-10 67.4 115 33.0
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.5e-09 66.6 120 39.2
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.5e-09 66.6 104 38.5
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.5e-09 66.6 108 40.7
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-09 66.6 108 34.3
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 4.4e-09 65.1 100 37.0
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 7.5e-09 64.3 120 30.8
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 9.9e-09 63.9 95 42.1
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 8.3e-08 60.8 53 56.6
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.9e-07 59.7 141 35.5
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.1e-07 57.8 94 42.6
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 9.2e-07 57.4 101 33.7
HPP92_011136 Vanilla planifolia HOM05D004992 ORTHO05D006004 9.2e-07 57.4 77 39.0
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 4.6e-06 55.1 90 35.6


User provided reference genes

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