Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.0e-99 365.9 211 100.0
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.1e-79 300.4 209 76.6
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 8.9e-79 297.4 184 83.2
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 2.6e-78 295.8 179 86.0
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 5.8e-78 294.7 179 85.5
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 3.2e-76 288.9 183 82.5
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 1.2e-75 287.0 183 80.3
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.2e-75 287.0 182 78.6
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.1e-75 286.2 181 82.9
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.1e-75 286.2 181 82.9
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 2.7e-75 285.8 258 65.9
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 2.7e-75 285.8 175 85.7
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 3.5e-75 285.4 181 82.9
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 6.0e-75 284.6 182 80.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.3e-74 283.5 182 79.1
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.3e-74 282.7 177 81.4
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 3.9e-74 282.0 182 79.1
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 8.7e-74 280.8 177 82.5
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.5e-73 280.0 182 79.7
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 3.3e-73 278.9 183 77.6
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.3e-73 278.9 180 79.4
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.3e-73 278.5 177 81.9
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 4.3e-73 278.5 175 84.0
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 9.6e-73 277.3 184 78.8
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 2.8e-72 275.8 184 77.7
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 2.8e-72 275.8 178 79.8
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 3.6e-72 275.4 182 77.5
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 3.6e-72 275.4 178 79.2
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 6.2e-72 274.6 182 76.9
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.1e-72 274.2 182 79.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.1e-71 273.9 184 77.2
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.4e-71 273.5 177 77.4
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.1e-71 272.3 182 76.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 3.1e-71 272.3 182 76.4
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.0e-71 271.9 182 75.3
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 5.3e-71 271.6 181 80.1
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 6.9e-71 271.2 180 78.3
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 9.0e-71 270.8 185 76.8
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.2e-70 270.4 177 78.0
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 2.6e-70 269.2 204 71.6
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 4.4e-70 268.5 179 75.4
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.8e-70 268.1 182 75.8
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 5.8e-70 268.1 181 77.3
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 9.9e-70 267.3 185 76.2
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.7e-69 266.5 182 76.4
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.1e-68 263.8 180 77.2
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 3.2e-68 262.3 179 76.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-68 262.3 184 76.6
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 3.2e-68 262.3 181 74.0
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.6e-67 260.0 181 73.5
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 6.0e-67 258.1 179 76.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.0e-66 257.3 189 69.3
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.0e-66 257.3 189 69.3
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 5.1e-66 255.0 181 74.6
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 6.6e-66 254.6 183 73.2
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-65 253.8 180 73.3
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.5e-65 253.4 180 73.3
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.5e-65 253.4 180 73.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.5e-65 253.4 180 73.3
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.5e-65 253.4 171 76.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.5e-65 253.4 180 72.8
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 2.5e-65 252.7 179 76.0
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 2.5e-65 252.7 179 73.7
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 2.5e-65 252.7 179 73.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 2.5e-65 252.7 180 72.8
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-64 250.4 180 72.8
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.3e-64 250.4 170 73.5
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.6e-64 250.0 186 72.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.3e-63 245.0 170 72.9
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 6.9e-63 244.6 167 75.4
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-62 243.8 170 72.4
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.2e-62 243.8 180 72.2
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-62 243.4 170 72.9
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 4.5e-62 241.9 200 66.0
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.9e-61 238.4 155 78.1
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 6.4e-61 238.0 153 80.4
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.4e-60 236.9 146 82.2
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 5.4e-60 235.0 165 71.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.3e-58 230.3 167 73.1
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 3.3e-57 225.7 161 70.2
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 4.3e-57 225.3 148 78.4
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.6e-57 224.9 150 73.3
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 5.3e-55 218.4 147 78.9
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 9.0e-55 217.6 147 74.1
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 7.6e-54 214.5 145 76.6
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 4.9e-53 211.8 150 74.0
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.6e-51 206.8 132 81.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 2.1e-51 206.5 154 67.5
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 8.7e-50 201.1 189 59.3
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.3e-48 197.2 184 62.5
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 3.1e-47 192.6 185 61.6
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.1e-47 192.2 168 61.3
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.1e-44 184.1 182 56.6
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.2e-44 182.6 182 56.0
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.6e-43 180.3 121 75.2
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.3e-42 177.2 122 73.8
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 4.3e-41 172.2 179 57.0
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 8.2e-40 167.9 164 57.3
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.2e-37 159.8 161 55.9
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.5e-33 147.1 103 72.8
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 2.4e-31 139.8 108 63.0
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 3.4e-30 136.0 146 58.2
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 4.5e-30 135.6 125 64.0
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 7.7e-30 134.8 87 77.0
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.5e-28 128.6 85 81.2
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 5.5e-28 128.6 146 57.5
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-25 120.6 76 77.6
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 1.1e-23 114.4 94 59.6
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 9.1e-23 111.3 85 67.1
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.7e-22 108.2 71 76.1
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 7.7e-22 108.2 66 81.8
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 8.5e-21 104.8 181 40.9
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.1e-20 104.4 184 39.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 1.9e-20 103.6 128 50.8
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 4.0e-18 95.9 66 78.8
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 4.4e-17 92.4 88 65.9
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.3e-16 90.9 63 71.4
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.0e-13 81.3 65 61.5
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 1.3e-13 80.9 104 46.2
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 4.0e-10 69.3 47 68.1
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 5.2e-10 68.9 85 45.9
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 6.8e-10 68.6 55 61.8
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.0e-09 67.0 43 72.1


User provided reference genes

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