Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 5.2e-63 244.2 122 100.0
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 4.9e-29 131.3 128 60.9
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.3e-26 122.5 116 60.3
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 3.0e-26 122.1 116 59.5
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.9e-26 121.7 121 58.7
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 3.9e-26 121.7 118 61.9
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 3.6e-24 115.2 117 55.6
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-23 113.2 115 53.0
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-23 112.8 118 50.8
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.8e-23 112.8 118 50.8
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 3.1e-23 112.1 116 51.7
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.3e-23 111.3 108 55.6
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.5e-22 109.8 108 54.6
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.8e-22 107.8 108 53.7
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.6e-22 107.5 117 50.4
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 3.8e-21 105.1 116 55.2
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 2.7e-19 99.0 122 49.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 2.3e-18 95.9 111 45.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 7.3e-17 90.9 100 48.0
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 3.6e-16 88.6 115 49.6
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 5.3e-15 84.7 110 50.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.4e-14 82.0 113 45.1
Cpa.g.sc17.10 Carica papaya HOM05D004022 ORTHO05D004090 1.4e-12 76.6 115 42.6
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.4e-12 75.9 110 47.3
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 9.3e-12 73.9 110 40.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 4.6e-11 71.6 118 38.1
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.0e-10 70.5 122 36.9
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.3e-10 70.1 112 42.0
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.9e-10 68.6 114 39.5
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.1e-09 67.0 104 45.2
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.5e-09 66.6 114 37.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-09 66.6 104 46.2
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.9e-09 66.2 115 41.7
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.5e-09 65.9 101 43.6
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.5e-09 65.9 114 36.8
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 2.5e-09 65.9 120 37.5
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 3.3e-09 65.5 106 38.7
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.3e-09 65.1 108 41.7
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.3e-09 65.1 108 41.7
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 4.3e-09 65.1 112 34.8
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 7.4e-09 64.3 110 36.4
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 7.4e-09 64.3 121 37.2
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 7.4e-09 64.3 107 40.2
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 7.4e-09 64.3 107 40.2
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 9.6e-09 63.9 104 44.2
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.6e-08 63.2 110 37.3
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 2.1e-08 62.8 108 37.0
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.8e-08 62.4 114 36.0
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.7e-08 62.0 114 36.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 3.7e-08 62.0 109 40.4
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 4.8e-08 61.6 123 33.3
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 6.2e-08 61.2 111 36.9
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 6.2e-08 61.2 57 59.6
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.1e-08 60.8 109 37.6
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 8.1e-08 60.8 75 53.3
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.1e-07 60.5 107 42.1
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.4e-07 60.1 116 36.2
Phvul.006G165200 Phaseolus vulgaris HOM05D012904 ORTHO05D004090 1.4e-07 60.1 110 33.6
VMungo0540G1629 Vigna mungo HOM05D012904 ORTHO05D004090 1.4e-07 60.1 117 35.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.4e-07 59.3 105 35.2
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.4e-07 59.3 116 33.6
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 2.4e-07 59.3 108 39.8
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.4e-07 59.3 114 40.4
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.4e-07 59.3 108 38.9
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 3.1e-07 58.9 110 35.5
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.1e-07 58.9 108 38.9
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 3.1e-07 58.9 105 34.3
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 4.0e-07 58.5 107 37.4
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 4.0e-07 58.5 107 40.2
Medtr2g019320 Medicago truncatula HOM05D012904 ORTHO05D004090 4.0e-07 58.5 104 33.7
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 4.0e-07 58.5 99 37.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 5.3e-07 58.2 110 37.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 6.9e-07 57.8 111 36.0
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 6.9e-07 57.8 111 36.0
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 6.9e-07 57.8 111 36.0
ClCG01G024660 Citrullus lanatus HOM05D024889 ORTHO05D004090 6.9e-07 57.8 108 38.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 6.9e-07 57.8 107 38.3
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 6.9e-07 57.8 111 36.0
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 9.0e-07 57.4 112 37.5
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 9.0e-07 57.4 114 33.3
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 9.0e-07 57.4 108 38.0
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.2e-06 57.0 99 42.4
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.2e-06 57.0 109 34.9
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 1.2e-06 57.0 112 29.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.5e-06 56.6 103 35.0
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 1.5e-06 56.6 103 36.9
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.5e-06 56.6 112 34.8
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.0e-06 56.2 113 37.2
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.0e-06 56.2 99 36.4
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 2.0e-06 56.2 107 34.6
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 2.6e-06 55.8 112 37.5
CsaV3_6G051770 Cucumis sativus L. HOM05D024889 ORTHO05D004090 2.6e-06 55.8 117 35.9
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 2.6e-06 55.8 103 36.9
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.6e-06 55.8 105 38.1
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 4.5e-06 55.1 112 36.6
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 7.6e-06 54.3 111 35.1
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 7.6e-06 54.3 111 35.1
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 7.6e-06 54.3 113 37.2
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.6e-06 54.3 109 36.7
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.6e-06 54.3 109 36.7
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.6e-06 54.3 110 33.6
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 7.6e-06 54.3 103 35.0
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 7.6e-06 54.3 114 36.0
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.0e-05 53.9 116 33.6
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.0e-05 53.9 108 37.0


User provided reference genes

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