Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.8e-72 275.8 137 100.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.9e-62 241.9 133 91.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 6.4e-62 240.7 133 88.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-61 240.0 133 90.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-57 226.5 133 85.0
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.8e-57 224.6 133 81.2
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.8e-57 224.6 133 83.5
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.1e-56 221.9 133 81.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.0e-55 219.2 133 81.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 2.0e-55 219.2 130 83.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 4.5e-55 218.0 132 81.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.5e-55 218.0 133 81.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 5.8e-55 217.6 132 79.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.3e-54 216.5 133 78.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.7e-54 216.1 133 78.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-54 216.1 130 80.0
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.2e-54 215.7 130 80.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.2e-54 215.7 126 81.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.8e-54 214.9 131 79.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.8e-54 214.9 132 81.1
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.5e-54 214.2 128 82.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 8.4e-54 213.8 126 81.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-53 213.4 130 78.5
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.1e-53 213.4 132 78.0
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.4e-53 213.0 133 78.9
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-53 212.6 132 77.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.5e-53 212.2 131 78.6
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.5e-53 212.2 133 76.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.2e-53 211.8 130 76.9
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.2e-53 211.8 132 78.8
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.2e-53 211.5 126 81.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.5e-53 211.1 131 75.6
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 9.3e-53 210.3 130 79.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-52 209.9 131 77.9
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.2e-52 209.9 130 77.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 77.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.1e-52 209.1 130 79.2
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.7e-52 208.8 132 76.5
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.7e-52 208.8 132 76.5
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.7e-52 208.8 129 79.1
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.5e-52 208.4 130 77.7
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 3.5e-52 208.4 124 81.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.5e-52 208.4 125 80.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.6e-52 208.0 132 75.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.6e-52 208.0 130 77.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.0e-52 207.6 130 76.2
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.0e-51 206.8 128 77.3
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.8e-51 206.1 127 77.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-51 206.1 132 75.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.8e-51 206.1 130 76.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.3e-51 205.7 132 75.0
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.0e-51 205.3 126 80.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.9e-51 204.9 129 76.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.1e-51 204.5 137 74.5
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 6.7e-51 204.1 126 78.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.7e-51 204.1 127 78.7
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 8.7e-51 203.8 123 78.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 130 76.2
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.1e-50 203.4 127 78.7
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.5e-50 203.0 131 74.8
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.5e-50 202.2 126 77.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 3.3e-50 201.8 122 79.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.6e-49 199.5 130 73.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.2e-49 199.1 129 75.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.3e-48 194.5 130 72.3
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.0e-48 193.7 124 77.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.5e-47 193.0 128 75.0
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.5e-47 193.0 125 72.0
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.4e-47 191.8 122 75.4
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.4e-47 191.8 130 72.3
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.7e-47 190.7 128 72.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-46 190.3 130 72.3
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.0e-46 190.3 128 73.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.0e-46 190.3 147 66.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.7e-46 189.5 122 74.6
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.7e-46 189.5 127 72.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.2e-46 189.1 128 73.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.9e-46 188.7 114 78.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.8e-46 188.3 128 72.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.8e-46 188.3 126 72.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.8e-46 188.3 128 72.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 5.0e-46 188.0 123 74.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 6.5e-46 187.6 125 71.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.2e-45 185.3 127 67.7
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 7.2e-45 184.1 129 70.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.6e-44 183.0 120 72.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.6e-44 181.4 127 67.7
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.6e-44 181.4 125 70.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 6.1e-44 181.0 127 70.1
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-43 179.9 125 71.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.3e-43 179.1 127 67.7
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-43 179.1 129 65.1
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.3e-43 179.1 119 73.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.1e-43 177.9 128 69.5
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 5.1e-43 177.9 125 70.4
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 5.1e-43 177.9 127 66.1
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 5.1e-43 177.9 125 68.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 5.1e-43 177.9 121 68.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 6.7e-43 177.6 125 69.6
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-42 176.4 129 63.6
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-42 175.6 130 62.3
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.3e-42 175.3 128 71.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 129 64.3
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.3e-42 174.9 119 71.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 5.7e-42 174.5 126 69.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 5.7e-42 174.5 118 72.0
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-41 173.3 128 70.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.3e-41 173.3 114 73.7
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.7e-41 172.9 129 69.8
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.7e-41 172.9 117 73.5
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.8e-41 172.2 109 78.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.8e-41 172.2 126 64.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.3e-41 171.0 125 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.8e-40 169.5 119 67.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.8e-40 169.5 127 63.8
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 4.1e-40 168.3 127 64.6
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.1e-40 168.3 126 65.9
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.3e-40 167.9 112 71.4
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 9.1e-40 167.2 127 63.8
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.1e-40 167.2 109 76.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.9e-38 162.2 128 61.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.8e-38 161.8 126 62.7
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 129 62.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 127 61.4
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.4e-37 159.8 127 61.4
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-37 159.8 127 61.4
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.4e-37 159.8 122 63.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.2e-37 158.7 131 60.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.2e-37 158.3 126 61.9
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 7.2e-37 157.5 128 60.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 7.2e-37 157.5 119 63.0
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 7.2e-37 157.5 117 65.8
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 9.4e-37 157.1 129 65.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.1e-36 156.0 131 58.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.1e-36 156.0 126 60.3
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-36 156.0 127 60.6
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.1e-36 156.0 142 57.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-36 155.6 128 60.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.6e-36 155.2 125 63.2
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 6.1e-36 154.5 119 63.9
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 6.1e-36 154.5 126 61.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-35 153.7 127 59.1
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.0e-35 153.7 120 62.5
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.4e-35 153.3 128 60.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.4e-35 153.3 131 56.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.4e-35 153.3 107 71.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.3e-35 152.5 116 63.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 5.1e-35 151.4 120 60.8
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.1e-35 151.4 120 60.8
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.7e-35 151.0 123 59.3
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.6e-34 149.1 127 59.1
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.6e-34 149.1 127 59.1
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 3.3e-34 148.7 122 60.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.7e-33 145.2 123 59.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.3e-32 141.4 128 58.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-29 133.7 119 56.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.2e-29 131.0 119 54.6
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.7e-28 129.0 79 78.5
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.3e-24 114.8 66 77.3
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.9e-21 106.3 61 82.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 9.4e-21 104.0 65 78.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 6.8e-19 97.8 112 42.9
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.5e-18 96.7 82 65.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-18 95.5 131 46.6
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 9.7e-18 94.0 64 75.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 9.7e-18 94.0 64 75.0
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-17 92.8 53 81.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 3.7e-17 92.0 62 79.0
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.7e-17 92.0 68 72.1
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.3e-17 91.3 64 71.9
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.3e-17 90.9 133 39.1
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.4e-16 89.4 53 73.6
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.5e-15 85.1 57 64.9
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-12 76.6 51 78.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-11 73.9 59 64.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.7e-10 68.2 68 55.9
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.7e-07 59.3 64 48.4
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 5.9e-07 58.2 35 71.4
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 2.3e-06 56.2 35 65.7


User provided reference genes

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