Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 2.5e-95 352.1 170 100.0
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 1.4e-85 319.7 169 89.9
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 3.3e-84 315.1 167 89.2
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 8.5e-80 300.4 170 82.9
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 1.1e-79 300.1 167 86.2
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 7.2e-79 297.4 168 83.3
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 1.2e-78 296.6 170 82.4
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 2.1e-78 295.8 167 85.0
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.6e-78 295.0 165 83.6
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 6.1e-78 294.3 170 80.6
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.4e-77 293.1 164 83.5
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 4.0e-77 291.6 170 80.0
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 5.2e-77 291.2 169 81.7
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 6.7e-77 290.8 164 82.3
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 8.8e-77 290.4 164 82.3
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.1e-76 290.0 171 81.3
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 2.6e-76 288.9 164 82.3
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 3.3e-76 288.5 165 83.0
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.3e-76 288.5 164 81.7
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.3e-76 288.5 165 83.0
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.3e-76 288.5 165 83.0
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 3.3e-76 288.5 164 82.3
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 3.3e-76 288.5 170 78.8
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 3.3e-76 288.5 164 82.9
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 5.7e-76 287.7 162 81.5
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 7.5e-76 287.3 164 82.3
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 7.5e-76 287.3 165 81.2
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 7.5e-76 287.3 164 81.7
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 7.5e-76 287.3 165 81.8
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 7.5e-76 287.3 162 82.1
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 7.5e-76 287.3 168 81.0
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.2e-75 285.8 166 83.1
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 3.7e-75 285.0 170 79.4
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 4.8e-75 284.6 171 79.5
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 6.3e-75 284.3 162 80.9
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.4e-74 283.1 170 78.2
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.4e-74 283.1 170 78.2
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 2.4e-74 282.3 170 78.2
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 3.1e-74 282.0 164 79.9
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 5.3e-74 281.2 170 77.6
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 1.2e-73 280.0 164 79.9
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.2e-73 280.0 155 85.2
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 1.2e-73 280.0 169 78.7
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.2e-73 280.0 164 78.7
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 2.7e-73 278.9 168 78.0
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 3.5e-73 278.5 165 77.6
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 3.5e-73 278.5 164 78.7
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 4.5e-73 278.1 164 81.1
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 4.5e-73 278.1 168 78.0
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 7.7e-73 277.3 165 78.2
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 1.7e-72 276.2 161 79.5
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.7e-72 276.2 165 80.0
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 2.2e-72 275.8 161 81.4
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 5.0e-72 274.6 164 78.0
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.1e-71 273.5 161 80.1
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 9.4e-71 270.4 164 78.0
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 9.4e-71 270.4 171 76.6
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.2e-70 270.0 166 77.7
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 1.2e-70 270.0 158 80.4
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 1.2e-70 270.0 166 76.5
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 4.7e-70 268.1 165 78.2
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 6.1e-70 267.7 168 76.2
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 8.0e-70 267.3 168 76.2
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 8.0e-70 267.3 168 76.2
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.0e-69 266.9 170 74.7
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 1.0e-69 266.9 161 77.6
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.0e-69 266.9 168 75.0
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.0e-69 266.9 168 75.0
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 1.4e-69 266.5 167 76.6
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 2.3e-69 265.8 155 80.0
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 3.0e-69 265.4 151 82.1
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 4.0e-69 265.0 169 75.7
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 8.8e-69 263.8 170 74.7
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 8.8e-69 263.8 166 75.3
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 2.0e-68 262.7 161 77.0
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 2.0e-68 262.7 168 73.2
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 2.6e-68 262.3 168 76.2
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 2.6e-68 262.3 164 75.0
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 3.4e-68 261.9 167 76.0
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 3.4e-68 261.9 152 80.3
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 3.4e-68 261.9 161 75.8
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 5.7e-68 261.2 162 76.5
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 7.5e-68 260.8 170 73.5
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 3.7e-67 258.5 164 74.4
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 8.3e-67 257.3 162 77.8
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 8.3e-67 257.3 166 73.5
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.1e-66 256.9 161 75.2
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 1.4e-66 256.5 166 75.3
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 3.1e-66 255.4 166 74.7
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 3.1e-66 255.4 160 74.4
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 3.1e-66 255.4 161 75.8
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 5.4e-66 254.6 151 80.1
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 9.1e-66 253.8 188 68.1
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.2e-65 253.4 166 74.7
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 2.0e-65 252.7 160 76.2
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 7.7e-65 250.8 156 73.7
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 1.0e-64 250.4 164 73.8
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 6.5e-64 247.7 166 71.1
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 1.1e-63 246.9 169 71.6
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.5e-63 246.5 167 71.9
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 3.2e-63 245.4 139 81.3
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 3.2e-63 245.4 139 81.3
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 9.5e-63 243.8 166 69.9
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 3.6e-62 241.9 168 69.6
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.8e-61 239.6 189 63.5
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 5.2e-61 238.0 171 69.6
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 1.1e-58 230.3 150 71.3
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 7.7e-57 224.2 148 70.9
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 5.0e-56 221.5 165 68.5
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 9.5e-55 217.2 119 83.2
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 1.6e-54 216.5 158 67.7
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.0e-53 213.8 180 61.1
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 1.4e-53 213.4 155 69.7
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 2.3e-53 212.6 142 73.9
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.3e-53 212.6 150 64.7
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 2.6e-52 209.1 306 41.8
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 3.4e-52 208.8 134 76.1
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 5.0e-48 194.9 113 79.6
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 2.0e-44 183.0 166 59.6
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 8.1e-38 161.0 308 35.7
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 2.0e-36 156.4 203 44.3
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.2e-35 152.9 218 43.6
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 3.4e-28 129.0 84 77.4
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 3.2e-26 122.5 75 72.0
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.1e-25 119.8 75 72.0
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.7e-24 116.7 67 80.6
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 2.9e-19 99.4 79 57.0
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 4.0e-13 79.0 44 72.7
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 9.9e-12 74.3 107 38.3
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 2.2e-11 73.2 45 75.6
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.4e-10 70.5 82 45.1
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.0e-08 64.3 116 36.2
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 1.6e-06 57.0 47 63.8
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 2.1e-06 56.6 38 65.8


User provided reference genes

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