Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 5.9e-233 810.4 394 100.0
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 6.3e-203 710.7 393 87.3
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 4.1e-202 708.0 392 87.0
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 4.1e-194 681.4 392 83.4
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.7e-171 606.3 391 74.9
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 4.9e-171 604.7 382 75.1
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 1.9e-167 592.8 391 71.9
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 3.6e-166 588.6 392 72.7
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 3.1e-165 585.5 388 74.2
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 5.2e-165 584.7 392 70.4
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 8.9e-165 583.9 388 74.0
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 2.0e-164 582.8 389 70.7
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 4.4e-164 581.6 388 75.0
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 7.6e-164 580.9 396 73.7
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.1e-162 577.0 383 72.8
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.4e-162 576.6 388 71.6
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.9e-162 576.2 386 72.3
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.9e-162 576.2 386 71.2
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 4.1e-162 575.1 385 73.8
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 3.5e-161 572.0 392 70.7
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 8.1e-158 560.8 386 72.3
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 3.1e-157 558.9 390 72.8
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.0e-157 558.5 386 72.0
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 9.9e-156 553.9 379 74.1
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 1.7e-155 553.1 392 69.9
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 3.8e-155 552.0 390 72.1
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 1.4e-154 550.1 384 72.7
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.9e-154 549.7 392 69.6
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 3.2e-154 548.9 380 72.1
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 5.4e-154 548.1 385 69.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 9.3e-154 547.4 380 71.1
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 2.7e-153 545.8 379 72.3
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 3.5e-153 545.4 379 71.8
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 4.6e-153 545.0 390 70.8
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 6.0e-153 544.7 392 67.6
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 2.3e-152 542.7 382 69.9
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 5.1e-152 541.6 386 68.4
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 4.3e-151 538.5 380 71.8
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 9.6e-151 537.3 384 70.8
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.6e-150 536.6 378 70.9
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 2.8e-150 535.8 383 71.0
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 3.6e-150 535.4 383 68.4
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 4.8e-150 535.0 385 69.4
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.8e-149 533.1 391 68.0
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.4e-149 532.7 391 65.7
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 2.0e-148 529.6 377 69.2
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 4.5e-148 528.5 391 68.0
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 7.6e-148 527.7 377 69.2
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.1e-146 523.9 380 68.2
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 9.3e-146 520.8 386 67.1
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.6e-145 520.0 362 71.3
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.1e-145 519.6 389 64.8
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 3.5e-145 518.8 377 69.5
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 8.7e-144 514.2 392 65.3
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.5e-143 513.5 382 66.0
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.1e-141 507.3 386 64.8
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 1.4e-141 506.9 388 65.2
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 5.3e-141 505.0 381 65.4
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 8.4e-139 497.7 385 64.9
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 4.2e-138 495.4 385 64.7
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 2.5e-135 486.1 377 65.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 3.7e-134 482.3 401 60.1
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 4.8e-134 481.9 363 67.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 8.2e-134 481.1 415 59.5
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 3.1e-133 479.2 379 63.1
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.3e-131 473.8 319 73.7
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.7e-131 473.4 384 63.3
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.2e-131 473.0 388 62.9
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 2.2e-131 473.0 358 65.4
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 8.4e-131 471.1 343 71.1
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 3.5e-129 465.7 367 65.7
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 1.9e-127 459.9 383 62.1
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 6.9e-125 451.4 396 58.3
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 9.0e-125 451.1 388 58.5
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 2.6e-124 449.5 319 69.6
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.4e-122 443.7 294 72.4
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.2e-121 440.7 338 63.6
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 4.6e-121 438.7 384 60.2
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 1.5e-116 423.7 310 68.4
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.2e-110 403.3 395 54.2
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 7.7e-108 394.8 296 66.9
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.4e-106 390.6 313 64.2
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.6e-105 387.1 449 48.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.4e-101 374.0 473 45.2
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.6e-100 370.5 376 56.6
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 8.5e-99 364.8 383 50.7
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 5.5e-98 362.1 347 54.2
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.2e-95 354.4 298 62.4
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.0e-88 329.3 375 51.7
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 1.8e-85 320.5 283 60.1
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 7.0e-85 318.5 540 38.5
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.1e-77 294.7 289 54.7
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 1.6e-76 290.8 179 78.2
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 7.8e-76 288.5 247 59.5
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.1e-74 284.6 263 57.4
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.8e-73 280.0 170 78.8
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 3.0e-72 276.6 421 40.4
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 8.9e-72 275.0 272 54.8
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 5.4e-69 265.8 392 41.1
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 6.0e-68 262.3 258 57.4
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.0e-67 260.0 344 45.1
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 4.3e-66 256.1 319 46.4
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.3e-64 250.4 154 76.0
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 5.8e-63 245.7 221 58.8
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 2.3e-59 233.8 406 39.7
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 4.4e-55 219.5 200 56.5
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 3.0e-43 180.3 114 75.4
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.4e-38 162.5 121 67.8
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 4.2e-37 159.8 405 29.1
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 1.5e-34 151.4 313 35.5
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 4.3e-34 149.8 174 45.4
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 4.5e-31 139.8 82 78.0
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-28 131.7 80 80.0
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-28 131.7 141 48.2
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 4.6e-28 129.8 84 73.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.7e-27 125.9 88 68.2
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.3e-26 123.6 80 71.2
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 6.9e-24 115.9 69 79.7
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.0e-19 102.1 120 45.0
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.6e-17 94.7 64 70.3
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.4e-16 91.7 61 67.2
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-15 88.6 50 72.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-15 88.6 50 72.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.9e-13 81.3 49 73.5
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.0e-12 76.3 50 68.0
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 3.0e-11 73.9 67 55.2
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 6.7e-11 72.8 95 43.2
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.3e-10 70.5 45 71.1
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.3e-09 68.6 67 50.7
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 3.4e-07 60.5 28 92.9
Hund25721 Selenicereus undatus HOM05D005914 ORTHO05D007361 7.7e-07 59.3 70 42.9
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.7e-06 58.2 73 43.8


User provided reference genes

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