Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 6.3e-45 183.7 93 100.0
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 3.5e-27 124.8 85 80.0
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 7.1e-20 100.5 86 64.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 1.0e-18 96.7 92 56.5
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.3e-18 96.3 94 60.6
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 2.3e-18 95.5 88 60.2
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 3.0e-18 95.1 85 63.5
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 3.0e-18 95.1 86 68.6
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 3.9e-18 94.7 95 57.9
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 5.1e-18 94.4 84 63.1
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 6.6e-18 94.0 89 59.6
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 8.6e-18 93.6 87 58.6
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.1e-17 93.2 88 61.4
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.1e-17 93.2 85 67.1
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 1.5e-17 92.8 89 62.9
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 3.3e-17 91.7 88 60.2
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 4.3e-17 91.3 91 58.2
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 5.6e-17 90.9 87 58.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 9.6e-17 90.1 81 66.7
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 9.6e-17 90.1 81 66.7
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 9.6e-17 90.1 88 60.2
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.2e-16 89.7 87 55.2
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.6e-16 89.4 93 57.0
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.6e-16 89.4 92 56.5
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 2.8e-16 88.6 88 54.5
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 2.8e-16 88.6 87 56.3
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 4.7e-16 87.8 87 56.3
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 6.2e-16 87.4 88 58.0
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 8.1e-16 87.0 93 57.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 8.1e-16 87.0 87 56.3
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.1e-15 86.7 88 59.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.1e-15 86.7 81 65.4
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.1e-15 86.7 89 60.7
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.8e-15 85.9 87 54.0
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.8e-15 85.9 82 61.0
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 1.8e-15 85.9 87 55.2
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.8e-15 85.9 87 55.2
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 1.8e-15 85.9 90 47.8
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.4e-15 85.5 81 59.3
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.0e-15 84.7 82 59.8
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 4.0e-15 84.7 86 59.3
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 5.2e-15 84.3 94 53.2
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 5.2e-15 84.3 89 57.3
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 5.2e-15 84.3 89 57.3
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 6.8e-15 84.0 84 58.3
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 8.9e-15 83.6 87 54.0
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.2e-14 83.2 82 59.8
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.2e-14 83.2 89 57.3
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 1.5e-14 82.8 73 68.5
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.5e-14 82.8 85 54.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 2.0e-14 82.4 89 50.6
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 2.0e-14 82.4 81 60.5
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 2.0e-14 82.4 93 55.9
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.0e-14 82.4 94 50.0
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.6e-14 82.0 88 52.3
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.6e-14 82.0 84 54.8
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.4e-14 81.6 81 59.3
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 4.4e-14 81.3 90 47.8
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 7.6e-14 80.5 93 48.4
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 9.9e-14 80.1 75 60.0
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.7e-13 79.3 75 60.0
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 2.9e-13 78.6 89 47.2
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.8e-13 78.2 85 54.1
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 6.4e-13 77.4 88 52.3
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 6.4e-13 77.4 88 52.3
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 6.4e-13 77.4 85 50.6
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 8.4e-13 77.0 88 52.3
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 8.4e-13 77.0 88 52.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.1e-12 76.6 88 52.3
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 1.1e-12 76.6 88 52.3
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.1e-12 76.6 91 52.7
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.1e-12 76.6 88 51.1
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.4e-12 76.3 129 41.9
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.9e-12 75.9 88 48.9
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 3.2e-12 75.1 81 48.1
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 4.2e-12 74.7 89 49.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 7.1e-12 73.9 88 50.0
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.6e-11 72.8 73 56.2
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.7e-11 72.0 84 50.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 4.6e-11 71.2 91 47.3
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 4.6e-11 71.2 94 45.7
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 4.6e-11 71.2 73 53.4
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 7.8e-11 70.5 73 53.4
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 1.0e-10 70.1 76 55.3
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.3e-10 69.7 55 65.5
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.3e-10 69.7 89 43.8
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.3e-10 68.9 86 47.7
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 2.3e-10 68.9 91 46.2
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 2.3e-10 68.9 73 56.2
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 3.9e-10 68.2 72 52.8
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 3.9e-10 68.2 72 52.8
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 5.1e-10 67.8 72 52.8
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.6e-10 67.4 76 48.7
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 6.6e-10 67.4 81 50.6
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 8.7e-10 67.0 94 41.5
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 8.7e-10 67.0 93 47.3
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 8.7e-10 67.0 72 52.8
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.5e-09 65.5 86 48.8
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 2.5e-09 65.5 72 51.4
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 3.3e-09 65.1 95 45.3
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 4.3e-09 64.7 89 42.7
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.6e-09 64.3 66 57.6
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 5.6e-09 64.3 84 50.0
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 5.6e-09 64.3 93 46.2
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 5.6e-09 64.3 90 37.8
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 5.6e-09 64.3 90 37.8
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 7.3e-09 63.9 89 40.4
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 9.6e-09 63.5 94 44.7
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 9.6e-09 63.5 85 45.9
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 9.6e-09 63.5 86 46.5
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.3e-08 63.2 93 43.0
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.6e-08 62.8 86 45.3
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 2.1e-08 62.4 92 40.2
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.8e-08 62.0 89 43.8
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 4.8e-08 61.2 71 47.9
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 6.2e-08 60.8 66 51.5
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 8.1e-08 60.5 70 47.1
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 1.1e-07 60.1 116 39.7
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.4e-07 59.7 93 43.0
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.2e-06 56.6 71 46.5
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 1.5e-06 56.2 52 51.9
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 2.6e-06 55.5 63 49.2
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 4.4e-06 54.7 95 38.9


User provided reference genes

Program Settings