Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 3.0e-210 734.9 376 100.0
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 3.3e-140 502.3 469 62.7
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 3.3e-140 502.3 467 63.0
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 2.3e-125 453.0 460 58.3
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 1.4e-111 407.1 468 51.9
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 1.1e-106 391.0 422 54.0
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 9.3e-103 377.9 457 51.6
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 5.1e-101 372.1 461 49.2
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 2.5e-100 369.8 457 50.3
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 4.3e-100 369.0 448 49.6
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 2.1e-99 366.7 448 49.6
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.1e-98 364.4 446 49.3
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 1.4e-98 364.0 463 48.8
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 6.4e-96 355.1 437 49.4
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 1.4e-95 354.0 442 49.5
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 1.9e-95 353.6 448 49.3
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 1.9e-95 353.6 444 48.2
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 3.2e-95 352.8 465 48.8
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 9.3e-95 351.3 463 47.9
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 1.2e-94 350.9 437 51.3
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 3.5e-94 349.4 450 47.3
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 3.9e-93 345.9 465 47.3
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 3.3e-92 342.8 441 47.2
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 2.1e-91 340.1 438 48.2
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 9.0e-90 334.7 466 47.6
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 2.0e-89 333.6 428 48.6
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 2.6e-89 333.2 445 47.2
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.3e-88 330.9 429 48.7
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.3e-88 330.9 429 48.7
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 4.2e-87 325.9 459 45.8
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 9.3e-87 324.7 453 46.6
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 2.1e-86 323.6 420 46.0
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 2.1e-86 323.6 420 46.0
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 2.3e-85 320.1 456 46.9
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 5.1e-85 318.9 449 44.8
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.1e-84 317.8 425 48.0
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 1.1e-84 317.8 454 45.4
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.5e-84 317.4 429 47.3
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 1.5e-84 317.4 426 46.9
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 1.5e-84 317.4 468 44.4
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 4.3e-84 315.8 455 44.6
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 4.3e-84 315.8 429 47.8
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 7.4e-84 315.1 448 44.9
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 1.3e-83 314.3 426 46.5
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 2.8e-83 313.2 457 45.7
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 6.3e-83 312.0 429 45.0
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 8.2e-83 311.6 435 44.8
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 1.4e-82 310.8 438 45.0
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 5.3e-82 308.9 429 47.3
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 4.5e-81 305.8 420 44.5
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 2.2e-80 303.5 455 44.2
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 6.5e-80 302.0 463 43.8
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 8.4e-80 301.6 379 51.2
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 1.4e-79 300.8 431 45.2
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 3.2e-79 299.7 478 42.5
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 4.2e-79 299.3 379 50.4
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 7.9e-78 295.0 379 49.3
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 2.3e-77 293.5 383 49.1
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 6.7e-77 292.0 420 43.8
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 8.7e-77 291.6 446 43.9
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 1.5e-76 290.8 420 43.8
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 9.7e-76 288.1 455 43.3
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 1.3e-75 287.7 438 44.1
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 2.2e-75 287.0 419 43.7
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 3.7e-75 286.2 463 41.7
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 3.7e-75 286.2 464 41.4
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 2.4e-74 283.5 455 40.0
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 3.1e-74 283.1 437 43.0
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 2.0e-73 280.4 419 43.2
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 5.9e-73 278.9 453 40.6
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 1.7e-72 277.3 457 41.6
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 2.2e-72 276.9 388 44.1
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 1.1e-71 274.6 458 42.6
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 1.4e-71 274.2 432 41.2
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 1.4e-71 274.2 423 44.4
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 5.5e-71 272.3 455 40.0
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 1.2e-70 271.2 466 40.6
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 4.6e-70 269.2 453 41.9
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 6.1e-70 268.9 455 42.4
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 6.1e-70 268.9 414 43.2
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 2.5e-68 263.5 420 40.7
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 4.3e-68 262.7 436 42.2
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 1.7e-67 260.8 232 61.6
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 8.2e-67 258.5 310 48.4
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 4.7e-62 242.7 422 39.3
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.1e-60 238.0 312 50.6
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 5.7e-60 235.7 457 37.0
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 7.4e-60 235.3 374 39.6
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 9.7e-60 235.0 300 46.7
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.6e-57 227.6 437 38.0
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 4.5e-57 226.1 405 37.0
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 2.0e-52 210.7 351 38.5
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 2.0e-52 210.7 208 56.7
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 7.0e-50 202.2 471 34.0
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 6.1e-46 189.1 283 39.9
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 4.8e-43 179.5 476 33.4
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 8.3e-43 178.7 284 38.4
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 5.4e-42 176.0 357 35.6
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 6.5e-40 169.1 232 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.9e-39 167.5 434 30.4
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 5.5e-39 166.0 231 42.9
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.6e-36 157.1 493 28.4
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 7.5e-36 155.6 285 37.2
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 3.7e-35 153.3 458 29.0
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 1.3e-32 144.8 138 55.1
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 6.6e-32 142.5 364 33.5
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 2.4e-26 124.0 349 30.4
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 2.4e-26 124.0 349 30.4
MD11G1280000 Malus domestica HOM05D006802 ORTHO05D008507 1.4e-21 108.2 85 62.4
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 2.4e-18 97.4 92 62.0
GSVIVG01001201001 Vitis vinifera HOM05D006802 ORTHO05D008507 5.4e-18 96.3 90 57.8
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 6.6e-16 89.4 91 56.0
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 3.3e-15 87.0 90 55.6
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 2.1e-14 84.3 80 47.5
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 4.0e-13 80.1 164 32.3
BcaB02g08068 Brassica carinata HOM05D006802 ORTHO05D008507 3.5e-09 67.0 48 64.6
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 6.0e-09 66.2 331 23.3
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 2.3e-08 64.3 204 31.9
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.3e-08 64.3 182 30.2
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 2.3e-08 64.3 204 30.4
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 3.9e-08 63.5 208 31.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 5.1e-08 63.2 182 29.7
FAN27G1988 Fragaria x ananassa HOM05D006802 ORTHO05D008507 5.1e-08 63.2 41 68.3
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 6.6e-08 62.8 218 32.6
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.6e-08 62.8 182 29.7
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 1.1e-07 62.0 210 31.0
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 1.5e-07 61.6 204 30.9
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 1.9e-07 61.2 195 29.7
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 3.3e-07 60.5 198 29.3
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.3e-07 60.5 246 28.9
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 4.3e-07 60.1 218 29.4
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 7.3e-07 59.3 200 30.5
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 9.5e-07 58.9 204 28.9
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 9.5e-07 58.9 171 29.8
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.2e-06 58.5 207 30.4
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 1.2e-06 58.5 207 26.1
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.6e-06 58.2 254 25.6
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 1.6e-06 58.2 182 31.3
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 2.1e-06 57.8 202 29.2
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 2.1e-06 57.8 196 28.1
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 2.8e-06 57.4 212 29.2
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.8e-06 57.4 237 26.6
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 2.8e-06 57.4 204 29.9
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 2.8e-06 57.4 193 26.9
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.6e-06 57.0 207 27.5
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.6e-06 57.0 199 28.1
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 3.6e-06 57.0 214 28.5
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 3.6e-06 57.0 193 28.0
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 6.2e-06 56.2 185 29.2
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 6.2e-06 56.2 168 31.5
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 6.2e-06 56.2 204 29.4
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 6.2e-06 56.2 199 28.1
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 8.1e-06 55.8 206 31.6
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 8.1e-06 55.8 187 28.3
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 8.1e-06 55.8 213 28.2
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 8.1e-06 55.8 181 28.2


User provided reference genes

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