Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 6.5e-57 223.8 110 100.0
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 4.0e-30 134.8 100 70.0
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 6.8e-30 134.0 87 78.2
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 5.8e-29 131.0 100 68.0
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 6.6e-25 117.5 100 65.0
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 5.6e-24 114.4 97 63.9
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 2.8e-23 112.1 98 62.2
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.6e-23 111.7 98 62.2
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.6e-23 111.7 98 62.2
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.2e-23 110.9 97 62.9
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.1e-22 108.6 97 61.9
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.1e-22 108.6 97 61.9
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 5.2e-22 107.8 88 65.9
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 8.9e-22 107.1 100 54.0
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 1.2e-21 106.7 103 61.2
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.2e-21 106.7 98 60.2
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.6e-21 105.5 95 60.0
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.4e-21 105.1 93 61.3
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 3.4e-21 105.1 97 54.6
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 3.4e-21 105.1 99 60.6
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 5.8e-21 104.4 95 58.9
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 1.3e-20 103.2 82 67.1
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 1.3e-20 103.2 97 57.7
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 1.3e-20 103.2 94 58.5
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 1.7e-20 102.8 91 59.3
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 2.2e-20 102.4 99 55.6
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 2.2e-20 102.4 96 58.3
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.8e-20 101.7 99 54.5
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 8.4e-20 100.5 100 58.0
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 1.9e-19 99.4 95 56.8
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 2.4e-19 99.0 93 57.0
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 2.4e-19 99.0 95 54.7
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 2.4e-19 99.0 91 57.1
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 4.1e-19 98.2 96 55.2
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 5.4e-19 97.8 95 58.9
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 9.2e-19 97.1 100 56.0
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 1.2e-18 96.7 98 59.2
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 1.2e-18 96.7 98 59.2
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 1.2e-18 96.7 98 59.2
CiPaw.15G021700 Carya illinoinensis HOM05D000219 ORTHO05D000226 1.2e-18 96.7 52 88.5
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 1.6e-18 96.3 107 51.4
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 2.1e-18 95.9 94 59.6
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 2.1e-18 95.9 98 58.2
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.1e-18 95.9 96 53.1
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 2.1e-18 95.9 94 60.6
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.1e-18 95.9 97 54.6
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 2.7e-18 95.5 93 59.1
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 4.6e-18 94.7 95 55.8
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.6e-18 94.7 95 56.8
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 6.0e-18 94.4 93 58.1
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 7.8e-18 94.0 98 58.2
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 7.8e-18 94.0 97 55.7
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 7.8e-18 94.0 95 53.7
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 1.0e-17 93.6 85 60.0
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 1.7e-17 92.8 98 59.2
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.7e-17 92.8 97 54.6
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 2.3e-17 92.4 96 55.2
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.3e-17 92.4 96 51.0
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 3.0e-17 92.0 91 57.1
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 3.9e-17 91.7 114 49.1
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 5.1e-17 91.3 95 56.8
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 1.1e-16 90.1 100 59.0
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 1.1e-16 90.1 98 55.1
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 1.5e-16 89.7 98 54.1
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 2.5e-16 89.0 82 62.2
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.5e-16 89.0 97 52.6
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 4.3e-16 88.2 94 57.4
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 5.6e-16 87.8 100 48.0
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 5.6e-16 87.8 99 53.5
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 9.6e-16 87.0 99 56.6
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.6e-15 86.3 73 65.8
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.6e-15 86.3 73 65.8
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 2.1e-15 85.9 72 66.7
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 2.1e-15 85.9 76 64.5
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 2.8e-15 85.5 100 50.0
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 4.7e-15 84.7 98 53.1
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 6.2e-15 84.3 73 64.4
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 6.2e-15 84.3 82 57.3
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 6.2e-15 84.3 100 50.0
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 8.1e-15 84.0 73 64.4
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 8.1e-15 84.0 91 49.5
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.1e-14 83.6 105 46.7
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 1.4e-14 83.2 80 56.2
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.8e-14 82.8 96 52.1
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 1.8e-14 82.8 99 48.5
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 1.8e-14 82.8 102 49.0
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 3.1e-14 82.0 98 44.9
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 6.9e-14 80.9 96 47.9
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 6.9e-14 80.9 76 59.2
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 1.5e-13 79.7 99 46.5
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 1.5e-13 79.7 99 53.5
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 2.0e-13 79.3 89 48.3
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 2.6e-13 79.0 96 50.0
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 4.4e-13 78.2 83 51.8
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 7.6e-13 77.4 96 50.0
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 1.3e-12 76.6 112 45.5
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 1.7e-12 76.3 100 46.0
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 2.2e-12 75.9 96 47.9
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 2.2e-12 75.9 80 53.8
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 3.8e-12 75.1 75 53.3
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 3.8e-12 75.1 94 47.9
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 4.9e-12 74.7 99 48.5
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 4.9e-12 74.7 96 50.0
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 8.4e-12 73.9 59 69.5
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 8.4e-12 73.9 114 44.7
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 8.4e-12 73.9 91 50.5
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 1.1e-11 73.6 96 49.0
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 2.4e-11 72.4 96 47.9
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 7.1e-11 70.9 70 58.6
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 2.1e-10 69.3 75 53.3
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 7.8e-10 67.4 69 58.0
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 3.9e-09 65.1 59 59.3
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 6.6e-09 64.3 97 41.2
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 6.6e-09 64.3 74 47.3
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 1.5e-08 63.2 58 55.2
AL2G18000 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.9e-08 62.8 46 67.4
AL3G17700 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.3e-08 62.0 42 73.8
AL7G52340 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.3e-08 62.0 42 73.8
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 8.1e-07 57.4 58 55.2
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 8.1e-07 57.4 113 39.8
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 2.4e-06 55.8 49 59.2
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 5.3e-06 54.7 90 40.0
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 6.9e-06 54.3 110 39.1
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 6.9e-06 54.3 82 46.3
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 9.0e-06 53.9 88 43.2


User provided reference genes

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