Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 4607.4 2302 100.0
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 3835.4 2447 78.9
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 3824.2 2423 79.1
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 3515.3 2885 64.3
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 3352.4 2428 69.4
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 3321.9 2432 69.5
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 3281.5 2425 68.2
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3266.5 2429 67.9
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 3239.5 2435 66.8
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 3238.0 2311 70.8
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 3227.2 2427 67.2
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 3220.6 2431 66.9
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 3219.5 2447 66.8
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3218.3 2449 66.8
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 3213.3 2434 67.3
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3210.2 2449 66.5
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 3206.8 2443 66.6
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 3199.5 2424 66.7
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 3199.5 2436 65.9
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 3187.9 2427 66.7
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 3179.8 2443 65.5
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3179.0 2443 66.1
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3162.9 2443 65.1
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 3154.8 2410 66.4
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 3153.2 2429 66.2
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 3028.8 2425 62.8
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3011.9 2424 64.1
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 2996.5 2430 62.7
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 2990.3 2429 62.7
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 2970.3 2431 61.9
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 2962.9 2425 62.9
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 2962.9 2425 62.8
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2962.9 2429 62.0
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 2962.2 2428 62.8
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2954.5 2427 61.5
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 2950.6 2433 61.7
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 2949.5 2434 61.4
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2948.3 2428 61.6
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 2944.8 2553 60.6
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 2938.3 2442 62.3
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 2887.4 2427 60.8
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 2886.3 2431 60.2
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 2882.8 2401 61.7
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2866.3 2421 60.3
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 2857.0 2405 59.9
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2844.7 2422 59.7
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2829.7 2424 60.0
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 2807.3 2428 59.6
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 2799.6 2409 59.9
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 2799.6 2730 54.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 2786.5 2431 59.3
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 2771.5 2423 57.9
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 2764.2 2405 58.0
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 2744.9 2402 57.7
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 2744.1 2407 57.5
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 2740.7 2401 57.8
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 2739.1 2420 57.6
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 2731.8 2401 57.3
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2726.8 2405 57.8
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 2725.3 2405 57.8
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 2723.3 2431 57.7
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 2721.0 2409 58.4
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 2712.6 2412 57.8
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 2697.5 2423 56.7
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 2694.1 2296 59.4
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 2654.4 2415 56.5
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 2517.7 2451 53.7
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2389.4 2387 54.9
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2372.4 1993 60.2
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 2348.2 2433 50.6
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 2255.3 1832 63.0
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2250.7 2305 52.0
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 2079.3 1735 61.1
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2060.4 1635 64.0
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2020.4 1812 57.6
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 2013.8 1629 65.3
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1845.5 1658 57.2
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 1815.4 2552 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 1806.6 2503 41.6
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 1800.4 1775 52.9
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 1758.0 2509 40.1
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 0.0e+00 1582.4 1964 45.3
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 1490.3 1752 46.7
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 1489.9 2371 37.6
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 1402.5 944 72.1
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1295.8 1172 57.2
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 1277.3 1157 56.9
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 1271.5 1325 50.0
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 1184.9 1100 56.7
Cpa.g.sc0.152 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1171.4 1021 59.2
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1157.5 1063 56.4
Lj6P719T30 Lonicera japonica HOM05D003919 ORTHO05D004906 4.4e-304 1049.3 913 59.3
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.5e-291 1006.9 1190 44.6
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.3e-263 914.8 1016 50.4
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 1.3e-250 871.7 717 62.9
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 2.4e-249 867.5 965 49.7
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 4.5e-232 810.1 847 50.9
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 1.7e-231 808.1 591 70.2
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 2.7e-229 800.8 607 68.4
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 1.8e-228 798.1 668 60.0
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 2.3e-228 797.7 667 59.8
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 8.2e-226 789.3 604 67.2
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 4.1e-225 786.9 672 59.1
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 5.1e-212 743.4 609 63.2
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 2.4e-209 734.6 780 51.5
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 2.6e-208 731.1 608 62.3
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 4.5e-208 730.3 602 62.5
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 3.9e-204 717.2 602 61.8
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 1.1e-203 715.7 727 52.1
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 4.8e-194 683.7 596 59.2
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.1e-189 668.3 569 59.8
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 2.6e-187 661.4 598 53.7
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 9.1e-185 652.9 518 63.1
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 1.6e-165 589.0 505 58.6
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-155 553.5 642 46.6
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 8.1e-133 480.3 558 48.9
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 6.9e-132 477.2 2832 23.3
TAR374G0021 Trochodendron aralioides HOM05D003919 ORTHO05D004906 2.0e-123 449.1 392 63.5
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 6.9e-116 424.1 498 48.2
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 3.5e-112 411.8 704 39.5
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-102 378.6 668 36.7
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 5.3e-92 344.7 308 57.8
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 4.4e-86 325.1 1083 27.0
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.2e-82 312.8 1292 25.1
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 2.9e-82 312.4 1269 24.4
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.9e-81 309.7 412 43.2
Os04g0675300 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 6.1e-80 304.7 301 55.8
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 5.4e-76 291.6 700 29.4
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 2.7e-75 289.3 1284 25.6
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 1.0e-74 287.3 1274 24.9
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 8.5e-74 284.3 704 28.7
ECA233G5805 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.1e-73 283.9 299 51.2
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 9.4e-73 280.8 405 43.2
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.1e-68 265.8 691 28.2
GSVIVG01028587001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.1e-65 257.3 231 59.7
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 3.7e-61 242.3 166 71.7
ECA233G0256 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.8e-54 218.4 257 48.6
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 3.7e-53 215.7 161 65.8
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 8.6e-42 177.9 132 66.7
AUR62015233 Chenopodium quinoa HOM05D003919 ORTHO05D004906 2.3e-34 153.3 105 69.5
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 2.8e-32 146.4 217 41.5
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 8.9e-31 141.4 134 54.5
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 2.7e-27 129.8 150 48.0
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 3.9e-26 125.9 431 27.4
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 9.6e-25 121.3 274 28.8
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 3.6e-24 119.4 230 32.6
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 2.9e-21 109.8 356 28.7
Oeu014156.1 Olea europaea HOM05D003919 ORTHO05D036952 1.4e-20 107.5 165 38.2
Lsat_1_v5_gn_5_23900 Lactuca sativa HOM05D003509 ORTHO05D004205 3.2e-20 106.3 387 26.4
MELO3C004964.2 Cucumis melo HOM05D003919 ORTHO05D004906 1.3e-18 100.9 67 65.7
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 3.9e-18 99.4 246 31.7
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 8.7e-18 98.2 341 28.2
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 5.6e-17 95.5 137 34.3
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.1e-16 93.6 248 31.0
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 8.1e-16 91.7 276 28.3
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 3.1e-15 89.7 59 67.8
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 8.1e-08 65.1 266 27.4


User provided reference genes

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