Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G076100 Carya illinoinensis HOM05D006896 ORTHO05D007622 1.6e-96 356.3 205 100.0
CiPaw.04G075800 Carya illinoinensis HOM05D006896 ORTHO05D007622 1.4e-47 193.7 179 70.9
QL06p022383 Quercus lobata HOM05D006896 ORTHO05D007622 1.7e-45 186.8 169 62.7
Haze_24358 Corylus avellana HOM05D006896 ORTHO05D007622 4.5e-43 178.7 220 53.6
MD15G1357300 Malus domestica HOM05D006896 ORTHO05D007622 3.3e-38 162.5 211 53.1
TAR636G1166 Trochodendron aralioides HOM05D006896 ORTHO05D007622 5.7e-38 161.8 209 57.4
CANSAT21G0002 Cannabis sativa HOM05D006896 ORTHO05D007622 4.1e-36 155.6 142 60.6
Manes.04G135200 Manihot esculenta HOM05D006896 ORTHO05D007622 4.1e-36 155.6 190 55.8
GSVIVG01016958001 Vitis vinifera HOM05D006896 ORTHO05D007622 4.1e-36 155.6 202 49.0
MD08G1165000 Malus domestica HOM05D006896 ORTHO05D007622 7.7e-35 151.4 156 53.2
Eucgr.F03083 Eucalyptus grandis HOM05D006896 ORTHO05D007622 5.0e-34 148.7 151 57.6
Cfa015335 Carpinus fangiana HOM05D006896 ORTHO05D007622 3.6e-32 142.5 218 49.5
Gohir.A09G147400 Gossypium hirsutum HOM05D006896 ORTHO05D007622 1.8e-31 140.2 145 53.1
Nn1g00183 Nelumbo nucifera HOM05D006896 ORTHO05D007622 3.0e-31 139.4 207 49.3
Gohir.D09G143000 Gossypium hirsutum HOM05D006896 ORTHO05D007622 3.3e-30 136.0 145 51.7
Gorai.006G164500 Gossypium raimondii HOM05D006896 ORTHO05D007622 4.4e-30 135.6 145 51.7
Cpa.g.sc25.137 Carica papaya HOM05D006896 ORTHO05D007622 7.5e-30 134.8 154 50.0
Thecc.01G002700 Theobroma cacao HOM05D006896 ORTHO05D007622 3.7e-29 132.5 182 45.6
Aqoxy3G03866 Aquilegia oxysepala HOM05D006896 ORTHO05D007622 4.8e-29 132.1 212 50.9
CiPaw.04G075200 Carya illinoinensis HOM05D006896 ORTHO05D007622 4.8e-29 132.1 131 71.0
Ciclev10026494m.g Citrus clementina HOM05D006896 ORTHO05D007622 4.1e-28 129.0 152 48.7
MELO3C024432.2 Cucumis melo HOM05D006896 ORTHO05D007622 2.0e-27 126.7 151 45.0
Ciclev10022257m.g Citrus clementina HOM05D006896 ORTHO05D007622 3.5e-27 125.9 152 47.4
Sed0020352 Sechium edule HOM05D006896 ORTHO05D007622 7.7e-27 124.8 150 45.3
CsaV3_7G035230 Cucumis sativus L. HOM05D006896 ORTHO05D007622 1.3e-26 124.0 150 44.7
Lalb_Chr02g0144491 Lupinus albus HOM05D006896 ORTHO05D007622 1.3e-26 124.0 205 42.4
Phvul.006G182200 Phaseolus vulgaris HOM05D006896 ORTHO05D007622 1.7e-26 123.6 156 48.1
Prupe.1G582300 Prunus persica HOM05D006896 ORTHO05D007622 2.5e-25 119.8 139 46.0
Potri.003G047600 Populus trichocarpa HOM05D006896 ORTHO05D007622 7.2e-25 118.2 150 48.7
Prupe.1G504500 Prunus persica HOM05D006896 ORTHO05D007622 1.0e-23 114.4 179 46.9
TWI75G0052 Tripterygium wilfordii HOM05D006896 ORTHO05D007622 4.0e-23 112.5 146 50.7
Glyma.15G077800 Glycine max HOM05D006896 ORTHO05D007622 5.2e-23 112.1 137 46.0
Glyma.15G171400 Glycine max HOM05D006896 ORTHO05D007622 5.2e-23 112.1 137 46.0
BcaB05g23986 Brassica carinata HOM05D006896 ORTHO05D007622 6.8e-23 111.7 154 45.5
Hund07447 Selenicereus undatus HOM05D006896 ORTHO05D007622 6.8e-23 111.7 152 42.8
VMungo0540G0426 Vigna mungo HOM05D006896 ORTHO05D007622 6.8e-23 111.7 156 44.9
arahy.Tifrunner.gnm1.ann1.530D0B Arachis hypogaea HOM05D006896 ORTHO05D007622 8.8e-23 111.3 131 45.8
arahy.Tifrunner.gnm1.ann1.73V7U9 Arachis hypogaea HOM05D006896 ORTHO05D007622 1.2e-22 110.9 135 45.2
Nitab4.5_0001057g0240 Nicotiana tabacum HOM05D006896 ORTHO05D007622 1.2e-22 110.9 211 47.4
Nitab4.5_0002546g0010 Nicotiana tabacum HOM05D006896 ORTHO05D007622 2.6e-22 109.8 211 46.9
Aa31LG5G1310 Aethionema arabicum HOM05D006896 ORTHO05D007622 1.1e-20 104.4 194 40.2
Peaxi162Scf00152g00734 Petunia axillaris HOM05D006896 ORTHO05D007622 1.1e-20 104.4 152 44.1
THA.LOC104825918 Tarenaya hassleriana HOM05D006896 ORTHO05D007622 1.1e-20 104.4 193 43.5
Psat6g044520 Pisum sativum HOM05D006896 ORTHO05D007622 1.4e-20 104.0 149 41.6
BcaC03g16098 Brassica carinata HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 45.1
A02p24490 Brassica napus HOM05D006896 ORTHO05D007622 5.4e-20 102.1 142 43.7
C02p38670 Brassica napus HOM05D006896 ORTHO05D007622 5.4e-20 102.1 142 43.7
BolC2t09885H Brassica oleracea HOM05D006896 ORTHO05D007622 5.4e-20 102.1 142 43.7
BraA02t07439Z Brassica rapa HOM05D006896 ORTHO05D007622 5.4e-20 102.1 142 43.7
EL10Ac4g10160 Beta vulgaris HOM05D006896 ORTHO05D007622 7.0e-20 101.7 136 46.3
EL10Ac4g10155 Beta vulgaris HOM05D006896 ORTHO05D007622 9.1e-20 101.3 136 46.3
COL.COLO4_30531 Corchorus olitorius HOM05D006896 ORTHO05D007622 2.0e-19 100.1 152 42.1
Sabra03G0029600 Salix brachista HOM05D000996 ORTHO05D000858 2.0e-19 100.1 156 43.6
EL10Ac4g10129 Beta vulgaris HOM05D006896 ORTHO05D007622 2.7e-19 99.8 136 46.3
Actinidia05615 Actinidia chinensis HOM05D006896 ORTHO05D007622 4.5e-19 99.0 155 44.5
Cc02_g30070 Coffea canephora HOM05D006896 ORTHO05D007622 4.5e-19 99.0 152 41.4
EL10Ac4g10131 Beta vulgaris HOM05D006896 ORTHO05D007622 5.9e-19 98.6 136 45.6
EL10Ac4g10121 Beta vulgaris HOM05D006896 ORTHO05D007622 1.0e-18 97.8 205 43.9
EL10Ac4g10168 Beta vulgaris HOM05D006896 ORTHO05D007622 1.0e-18 97.8 205 43.9
Sopen06g034890 Solanum pennellii HOM05D006896 ORTHO05D007622 1.0e-18 97.8 152 40.1
Thhalv10023695m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 1.7e-18 97.1 155 39.4
AL6G51750 Arabidopsis lyrata HOM05D006896 ORTHO05D007622 2.9e-18 96.3 152 40.8
Carub.0006s3560 Capsella rubella HOM05D006896 ORTHO05D007622 3.8e-18 95.9 141 42.6
Os07g0611600 Oryza sativa ssp. japonica HOM05D006896 ORTHO05D007622 5.0e-18 95.5 143 41.3
A07p06970 Brassica napus HOM05D006896 ORTHO05D007622 1.1e-17 94.4 150 40.7
DCAR_021683 Daucus carota HOM05D006896 ORTHO05D007622 1.1e-17 94.4 209 39.2
Lj2g0027443 Lotus japonicus HOM05D006896 ORTHO05D007622 2.5e-17 93.2 150 40.7
Duzib235G0563 Durio zibethinus HOM05D006896 ORTHO05D007622 3.2e-17 92.8 209 34.4
PSO210G5688 Papaver somniferum HOM05D006896 ORTHO05D007622 7.2e-17 91.7 157 40.8
Sc15g0001740 Simmondsia chinensis HOM05D006896 ORTHO05D007622 9.5e-17 91.3 151 39.1
PGR102G1058 Punica granatum HOM05D006896 ORTHO05D007622 1.2e-16 90.9 188 41.0
CAN.G855.24 Capsicum annuum HOM05D006896 ORTHO05D007622 2.1e-16 90.1 153 39.2
PGSC0003DMG401020091 Solanum tuberosum HOM05D006896 ORTHO05D007622 2.1e-16 90.1 153 39.9
Zm00001eb122950 Zea mays HOM05D006896 ORTHO05D007622 2.1e-16 90.1 128 40.6
Ah.06g194440 Amaranthus hybridus HOM05D006896 ORTHO05D007622 2.8e-16 89.7 206 39.8
PGSC0003DMG400024908 Solanum tuberosum HOM05D006896 ORTHO05D007622 3.6e-16 89.4 151 39.7
AT4G01590 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 6.1e-16 88.6 138 39.9
Cc04_g02450 Coffea canephora HOM05D006896 ORTHO05D007622 1.4e-15 87.4 217 35.0
Thhalv10028974m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 1.8e-15 87.0 147 37.4
Sp6g01500 Schrenkiella parvula HOM05D006896 ORTHO05D007622 2.3e-15 86.7 122 39.3
ClCG09G000270 Citrullus lanatus HOM05D006896 ORTHO05D007622 3.0e-15 86.3 184 42.4
BraA07t28487Z Brassica rapa HOM05D006896 ORTHO05D007622 5.2e-15 85.5 139 38.1
DCAR_023372 Daucus carota HOM05D001895 ORTHO05D002082 1.2e-14 84.3 153 41.2
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 1.2e-14 84.3 142 40.8
C07p10600 Brassica napus HOM05D006896 ORTHO05D007622 1.5e-14 84.0 155 37.4
BolC7t41525H Brassica oleracea HOM05D006896 ORTHO05D007622 1.5e-14 84.0 155 37.4
CARHR250080 Cardamine hirsuta HOM05D006896 ORTHO05D007622 2.0e-14 83.6 139 38.8
TAR636G1722 Trochodendron aralioides HOM05D006896 ORTHO05D007622 2.0e-14 83.6 88 51.1
ECA240G1433 Erigeron canadensis HOM05D006896 ORTHO05D007622 3.4e-14 82.8 210 41.0
ECA233G6105 Erigeron canadensis HOM05D006896 ORTHO05D007622 7.5e-14 81.6 198 39.9
unitig_27.g25077 Utricularia gibba HOM05D006896 ORTHO05D007622 1.7e-13 80.5 143 37.1
COL.COLO4_18518 Corchorus olitorius HOM05D006896 ORTHO05D007622 8.3e-13 78.2 133 40.6
Solyc06g083505.1 Solanum lycopersicum HOM05D006896 ORTHO05D007622 1.1e-12 77.8 137 36.5
RhsimUnG0044500 Rhododendron simsii HOM05D006896 ORTHO05D007622 3.1e-12 76.3 122 39.3
BcaC06g35810 Brassica carinata HOM05D006896 ORTHO05D007622 1.2e-11 74.3 132 37.1
FAN27G1591 Fragaria x ananassa HOM05D018050 ORTHO05D022598 2.7e-11 73.2 217 38.7
FAN20G0540 Fragaria x ananassa HOM05D018050 ORTHO05D022598 5.9e-11 72.0 196 38.3
HanXRQChr04g0122251 Helianthus annuus HOM05D006896 ORTHO05D007622 1.0e-10 71.2 196 37.8
Migut.I00962 Erythranthe guttata HOM05D006896 ORTHO05D007622 1.3e-10 70.9 161 37.9
Lsat_1_v5_gn_7_60640 Lactuca sativa HOM05D006896 ORTHO05D007622 1.3e-10 70.9 152 34.9
MD08G1171800 Malus domestica HOM05D006896 ORTHO05D007622 1.3e-10 70.9 102 44.1
Potri.014G085200 Populus trichocarpa HOM05D006896 ORTHO05D007622 2.9e-10 69.7 137 39.4
AT4G35685 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 3.8e-10 69.3 149 33.6
Ca_12592_v3 Cicer arietinum L. HOM05D006896 ORTHO05D007622 3.8e-10 69.3 143 39.2
RcHm_v2.0_Chr6g0294801 Rosa chinensis HOM05D018050 ORTHO05D022598 1.1e-09 67.8 213 38.5
Lj5g0019895 Lotus japonicus HOM05D006896 ORTHO05D007622 1.5e-09 67.4 80 48.8
SEGI_15291 Sequoiadendron giganteum HOM05D015888 ORTHO05D007622 3.3e-09 66.2 145 36.6
BcaB06g26744 Brassica carinata HOM05D006896 ORTHO05D007622 4.3e-09 65.9 137 33.6
FvH4_2g26230 Fragaria vesca HOM05D018050 ORTHO05D022598 4.3e-09 65.9 217 38.2
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 5.6e-09 65.5 154 34.4
RcHm_v2.0_Chr4g0422341 Rosa chinensis HOM05D018050 ORTHO05D022598 2.1e-08 63.5 158 34.8
AUR62042888 Chenopodium quinoa HOM05D000493 ORTHO05D007622 8.0e-08 61.6 81 44.4
Pp3c20_22330 Physcomitrium patens HOM05D015888 ORTHO05D007622 1.0e-07 61.2 218 31.7
HPP92_023992 Vanilla planifolia HOM05D006896 ORTHO05D007622 5.2e-07 58.9 151 31.8
BcaB06g28560 Brassica carinata HOM05D006896 ORTHO05D007622 2.0e-06 57.0 178 32.0
PSO210G1164 Papaver somniferum HOM05D006896 ORTHO05D007622 4.4e-06 55.8 102 35.3
Hma1.2p1_0151F.1_g067240 Hydrangea macrophylla HOM05D006896 ORTHO05D007622 5.7e-06 55.5 99 45.5


User provided reference genes

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