Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1813.1 943 100.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 0.0e+00 1265.8 953 70.9
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1262.7 945 71.1
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 0.0e+00 1257.3 951 70.7
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 0.0e+00 1126.3 951 66.7
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1078.5 1002 60.7
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 6.5e-312 1073.5 995 60.4
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 6.8e-304 1047.3 949 61.4
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.5e-303 1046.2 985 59.9
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.3e-299 1033.1 985 59.7
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 5.1e-299 1031.2 986 59.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 8.1e-297 1023.8 957 60.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.2e-295 1020.0 968 59.4
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 6.4e-294 1014.2 988 57.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 8.4e-294 1013.8 972 59.9
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.3e-290 1001.9 962 59.8
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.6e-290 1001.1 951 59.6
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.6e-289 999.6 954 58.9
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.6e-289 999.6 951 59.3
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.2e-287 993.4 964 58.3
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.5e-287 993.0 1012 56.4
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 9.9e-287 990.3 958 58.1
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.1e-285 986.9 960 58.6
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.0e-283 980.3 986 56.2
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.3e-283 979.2 950 58.7
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.9e-283 978.4 953 58.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 8.7e-283 977.2 953 58.3
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 6.2e-281 971.1 959 58.3
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 4.0e-280 968.4 954 57.8
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 4.0e-280 968.4 956 57.2
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.9e-278 961.4 982 55.7
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 5.4e-277 958.0 960 58.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 9.3e-277 957.2 977 55.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.2e-276 956.8 998 54.9
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.6e-276 956.4 953 57.7
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 4.6e-276 954.9 990 55.3
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.6e-276 954.9 965 57.2
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.3e-275 953.4 954 57.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-271 939.9 990 54.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.7e-270 936.4 971 56.1
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.8e-270 935.3 957 57.4
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.9e-270 934.9 955 57.7
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.6e-268 929.9 962 55.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.8e-267 926.4 820 60.9
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.5e-266 923.3 972 55.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.6e-265 919.8 1005 52.2
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 5.8e-263 911.4 995 53.1
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 7.6e-263 911.0 1005 52.0
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.5e-260 902.1 989 53.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.3e-259 899.4 950 53.9
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 3.0e-259 899.0 716 65.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.1e-258 897.1 1039 50.1
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.5e-258 896.0 1114 49.7
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.3e-258 895.6 974 52.6
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.7e-257 892.1 899 58.4
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 4.8e-257 891.7 665 66.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 9.0e-256 887.5 959 53.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 6.5e-254 881.3 960 53.1
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.2e-253 879.0 973 52.8
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.6e-252 876.7 965 52.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.8e-251 873.2 1001 51.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.1e-250 870.5 1085 48.6
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 4.3e-250 868.6 1006 52.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 6.3e-249 864.8 985 51.0
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.4e-248 863.6 933 52.9
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 6.9e-248 861.3 1033 49.6
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 2.0e-247 859.8 952 52.7
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 2.6e-247 859.4 1010 50.4
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.9e-245 853.2 986 52.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.5e-245 852.8 1006 51.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 7.2e-245 851.3 948 52.6
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.4e-245 850.9 971 50.9
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.7e-244 849.4 957 52.8
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.0e-243 847.4 669 64.3
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 3.3e-242 842.4 966 51.9
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.7e-241 840.1 989 49.9
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.2e-241 839.7 965 51.4
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 4.1e-240 835.5 960 51.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.9e-239 831.6 949 51.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-238 830.9 970 49.9
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.3e-238 830.5 950 50.8
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 4.2e-237 825.5 959 50.7
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.0e-235 820.8 672 63.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.3e-235 819.7 954 50.2
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 4.8e-233 812.0 950 49.9
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.0e-230 804.3 972 50.0
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.7e-230 803.5 683 60.3
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.9e-230 802.7 982 49.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 4.2e-229 798.9 974 50.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.1e-228 796.6 955 49.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 4.7e-228 795.4 946 50.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.0e-227 792.3 970 50.4
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.2e-225 786.6 952 49.4
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 6.3e-225 785.0 951 49.1
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 3.1e-224 782.7 670 61.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 3.1e-224 782.7 680 59.7
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.1e-224 782.7 664 61.0
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 9.1e-224 781.2 668 60.8
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 9.1e-224 781.2 664 61.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.5e-223 779.2 954 48.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 3.5e-223 779.2 956 49.1
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.9e-222 776.2 679 59.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.1e-221 774.2 678 59.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.8e-219 766.9 973 47.9
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 3.4e-218 762.7 984 47.9
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.2e-217 760.0 955 49.0
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.7e-214 750.4 964 48.1
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 2.0e-207 726.9 665 56.8
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 2.7e-207 726.5 963 48.4
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 5.2e-203 712.2 953 45.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 2.7e-199 699.9 723 52.6
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.1e-197 694.5 678 55.3
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 8.0e-196 688.3 680 54.4
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.3e-174 617.8 1008 41.5
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.7e-174 617.5 672 50.6
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 6.7e-158 562.4 695 45.6
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 4.0e-155 553.1 624 48.7
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.0e-154 550.8 867 41.1
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 9.6e-149 531.9 313 91.7
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 7.6e-146 522.3 722 47.4
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.8e-134 484.6 663 43.6
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.0e-105 389.0 519 38.7
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.1e-103 381.3 306 60.1
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 9.1e-99 365.9 751 32.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.9e-97 360.9 479 39.2
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 7.0e-91 339.7 454 41.0
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.1e-42 178.7 115 72.2
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.9e-41 174.5 115 72.2
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.9e-33 147.9 415 30.1
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.2e-26 126.3 189 43.4
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 5.1e-25 120.9 146 47.9
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 4.8e-15 87.8 129 41.9
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 6.3e-15 87.4 129 41.9
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 2.6e-13 82.0 101 44.6
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.2e-12 79.0 101 44.6
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 5.0e-12 77.8 80 57.5
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.7e-07 62.8 53 62.3


User provided reference genes

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