Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 0.0e+00 1234.2 656 100.0
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.5e-283 978.0 662 80.1
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.3e-274 949.5 662 78.4
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 3.9e-274 948.0 662 78.2
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 9.4e-268 926.8 659 77.1
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.7e-261 906.0 665 75.0
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.8e-250 867.1 659 71.2
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.3e-248 863.2 659 70.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.1e-247 858.6 659 72.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.0e-245 851.3 665 71.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 3.2e-244 848.6 662 71.3
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.2e-243 846.7 662 71.0
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.8e-242 842.8 659 70.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.3e-242 842.4 656 70.3
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.0e-242 841.6 652 71.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.2e-241 840.1 646 71.4
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.6e-241 839.0 660 69.5
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.1e-239 833.6 663 69.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.1e-239 831.6 658 69.9
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.5e-238 828.6 655 69.5
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 4.5e-238 828.2 634 71.6
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.0e-237 827.0 650 71.1
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.9e-237 825.5 658 69.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 3.2e-236 822.0 660 68.9
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 4.2e-236 821.6 663 69.5
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.2e-236 821.6 665 68.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 7.2e-236 820.8 687 68.0
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.2e-235 820.1 687 67.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.7e-235 818.9 687 67.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 8.0e-235 817.4 666 67.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.0e-234 817.0 658 68.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.0e-234 817.0 672 67.4
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.0e-234 815.1 669 66.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 5.2e-234 814.7 658 68.4
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 6.8e-234 814.3 657 68.3
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 7.5e-233 810.8 693 65.7
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 6.3e-232 807.7 670 68.1
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.8e-231 806.2 672 66.5
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 4.1e-231 805.1 607 71.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.7e-229 799.7 672 67.1
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 2.3e-229 799.3 672 66.7
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.5e-228 796.6 695 64.3
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.0e-226 788.9 658 66.1
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.2e-226 788.1 693 64.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.8e-226 787.7 691 64.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-225 786.6 691 64.8
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 4.4e-225 785.0 659 65.9
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.3e-224 783.5 656 66.9
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 3.1e-223 778.9 665 64.5
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 7.8e-222 774.2 664 65.1
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.3e-221 773.5 665 64.7
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.2e-219 766.9 666 65.2
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 4.7e-219 765.0 658 64.6
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.0e-217 759.6 669 63.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.6e-217 759.2 662 62.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.6e-217 759.2 661 62.8
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.9e-216 755.7 630 63.8
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 9.2e-215 750.7 662 65.6
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.6e-213 744.6 662 62.2
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.3e-212 741.9 650 63.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.8e-211 739.2 570 67.2
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.2e-209 733.8 651 62.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 5.8e-209 731.5 653 62.9
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.9e-208 728.4 653 62.8
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 5.4e-207 724.9 667 62.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 1.2e-206 723.8 665 61.2
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.1e-206 723.0 615 64.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.0e-205 720.7 649 63.6
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.3e-205 720.3 662 60.7
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-204 717.2 660 59.8
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.5e-204 716.8 651 61.3
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 7.3e-204 714.5 651 61.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 8.1e-203 711.1 651 62.4
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 4.0e-202 708.8 655 60.9
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 8.9e-202 707.6 549 67.2
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.4e-201 705.3 656 60.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-200 703.7 655 60.6
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.3e-200 703.7 647 61.5
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.9e-200 702.6 651 60.4
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.6e-198 696.8 655 58.8
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 2.7e-198 696.0 641 60.5
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.5e-198 695.7 612 64.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 4.6e-198 695.3 650 59.5
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.3e-197 693.7 656 59.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.7e-197 693.3 648 60.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.3e-197 693.0 646 60.2
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.2e-194 681.8 674 58.5
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 5.8e-193 678.3 656 57.8
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.8e-192 675.6 672 59.8
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.2e-191 672.5 656 58.7
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 7.8e-190 667.9 603 65.0
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.0e-189 666.0 603 64.2
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.9e-188 663.3 663 60.5
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.1e-187 659.8 654 57.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.1e-183 647.5 660 58.0
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.1e-183 647.5 516 67.2
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-182 643.7 661 56.7
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.0e-173 614.4 663 54.3
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.9e-172 610.1 622 55.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.8e-171 606.3 651 54.1
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.0e-162 574.7 449 72.2
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.2e-142 511.1 538 54.6
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 3.6e-134 483.0 624 47.6
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 8.0e-134 481.9 578 47.2
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 5.2e-125 452.6 329 72.0
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.1e-122 443.4 677 41.9
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 5.9e-121 439.1 662 42.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.7e-113 413.7 665 43.0
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 3.3e-103 380.2 422 56.6
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.4e-100 370.2 301 64.5
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.7e-99 367.9 642 36.6
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.7e-99 366.7 346 61.3
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 7.0e-98 362.5 549 43.9
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-95 354.0 425 50.6
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.9e-93 345.5 323 57.3
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.0e-85 320.1 250 67.6
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.3e-79 300.4 328 50.9
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.0e-64 252.3 691 28.1
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 2.5e-63 247.7 656 28.8
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.5e-52 211.8 150 68.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.8e-51 207.2 189 62.4
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.0e-48 199.1 253 48.2
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.3e-48 198.0 260 47.7
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 6.2e-46 189.9 642 26.9
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 2.5e-39 167.9 177 54.2
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 3.3e-39 167.5 253 43.5
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 9.7e-39 166.0 253 43.1
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.6e-38 165.2 115 71.3
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 2.5e-34 151.4 99 77.8
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 6.7e-32 143.3 138 52.9
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 5.7e-31 140.2 98 67.3
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 2.0e-28 131.7 153 49.0
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.4e-28 131.0 189 43.4
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 8.5e-27 126.3 151 52.3
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.1e-25 121.7 83 71.1
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.7e-23 113.6 393 25.7
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 7.4e-23 113.2 356 27.8
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.6e-17 95.5 83 65.1
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 6.1e-17 93.6 124 44.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 2.3e-16 91.7 154 43.5
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 6.7e-16 90.1 106 48.1
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.7e-14 85.5 142 40.1
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.7e-14 85.5 142 40.1
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.7e-14 85.5 142 40.1
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.7e-14 84.3 128 42.2
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 3.7e-14 84.3 142 39.4
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 3.7e-14 84.3 142 39.4
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 4.8e-14 84.0 142 39.4
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.5e-12 77.8 128 46.1
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 7.7e-12 76.6 108 49.1
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 5.5e-10 70.5 45 68.9
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.2e-07 62.8 53 52.8
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.2e-07 62.8 53 52.8
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 2.2e-06 58.5 71 49.3
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 6.3e-06 57.0 119 27.7


User provided reference genes

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