Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G005800 Carya illinoinensis HOM05D008343 ORTHO05D009841 4.6e-35 152.1 73 100.0
QL06p040052 Quercus lobata HOM05D008343 ORTHO05D009841 4.1e-20 102.4 67 74.6
Haze_15346 Corylus avellana HOM05D008343 ORTHO05D009841 1.4e-15 87.4 61 68.9
Cfa004065 Carpinus fangiana HOM05D008343 ORTHO05D009841 1.2e-14 84.3 61 67.2
MD02G1179300 Malus domestica HOM05D008343 ORTHO05D009841 1.2e-14 84.3 72 61.1
Eucgr.H02229 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.4e-14 82.4 72 56.9
Eucgr.H02234 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.4e-14 82.4 72 55.6
Eucgr.H02237 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.4e-14 82.4 72 55.6
Eucgr.H02240 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.8e-14 82.0 72 55.6
Eucgr.H01292 Eucalyptus grandis HOM05D008343 ORTHO05D009841 7.6e-14 81.6 72 55.6
Dinv30037 Davidia involucrata HOM05D008343 ORTHO05D009841 2.2e-13 80.1 65 61.5
CiPaw.01G012500 Carya illinoinensis HOM05D008343 ORTHO05D009841 2.9e-13 79.7 75 65.3
TAR376G0584 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.8e-13 79.3 64 57.8
Eucgr.H02236 Eucalyptus grandis HOM05D008343 ORTHO05D009841 8.4e-13 78.2 56 66.1
Prupe.6G228500 Prunus persica HOM05D008343 ORTHO05D009841 1.4e-12 77.4 63 61.9
Potri.007G049500 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.4e-12 76.6 74 56.8
Eucgr.H02233 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.2e-12 75.9 56 64.3
MD15G1289400 Malus domestica HOM05D014781 ORTHO05D009841 5.4e-12 75.5 72 54.2
Eucgr.H01293 Eucalyptus grandis HOM05D008343 ORTHO05D009841 7.1e-12 75.1 56 64.3
Eucgr.H02243 Eucalyptus grandis HOM05D008343 ORTHO05D009841 9.2e-12 74.7 72 52.8
Dinv26871 Davidia involucrata HOM05D008343 ORTHO05D009841 3.5e-11 72.8 71 56.3
TAR376G0451 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.5e-11 72.8 56 66.1
TAR376G1160 Trochodendron aralioides HOM05D008343 ORTHO05D009841 6.0e-11 72.0 50 64.0
GSVIVG01000214001 Vitis vinifera HOM05D008343 ORTHO05D009841 6.0e-11 72.0 69 58.0
Potri.016G015600 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.3e-10 70.9 74 51.4
Potri.006G008066 Populus trichocarpa HOM05D008343 ORTHO05D009841 3.0e-10 69.7 71 53.5
TAR376G0088 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.9e-10 69.3 50 62.0
Cpa.g.sc6.93 Carica papaya HOM05D008343 ORTHO05D009841 6.6e-10 68.6 57 57.9
Dinv30038 Davidia involucrata HOM05D008343 ORTHO05D009841 6.6e-10 68.6 51 64.7
Potri.005G142900 Populus trichocarpa HOM05D008343 ORTHO05D009841 6.6e-10 68.6 73 50.7
Lalb_Chr16g0388911 Lupinus albus HOM05D008343 ORTHO05D009841 2.5e-09 66.6 67 47.8
FAN28G1184 Fragaria x ananassa HOM05D014781 ORTHO05D009841 3.3e-09 66.2 66 50.0
Lalb_Chr05g0226171 Lupinus albus HOM05D008343 ORTHO05D009841 3.3e-09 66.2 67 50.7
FvH4_1g16830 Fragaria vesca HOM05D014781 ORTHO05D009841 4.3e-09 65.9 72 50.0
FAN19G0512 Fragaria x ananassa HOM05D014781 ORTHO05D009841 4.3e-09 65.9 72 50.0
FAN26G0261 Fragaria x ananassa HOM05D014781 ORTHO05D009841 4.3e-09 65.9 72 50.0
Hma1.2p1_0239F.1_g099990 Hydrangea macrophylla HOM05D008343 ORTHO05D009841 4.3e-09 65.9 63 58.7
FAN28G2323 Fragaria x ananassa HOM05D014781 ORTHO05D009841 9.6e-09 64.7 66 48.5
Glyma.17G166600 Glycine max HOM05D008343 ORTHO05D009841 1.6e-08 63.9 68 50.0
Lj4g0017585 Lotus japonicus HOM05D008343 ORTHO05D009841 1.6e-08 63.9 70 52.9
QL06p040048 Quercus lobata HOM05D008343 ORTHO05D009841 1.6e-08 63.9 76 51.3
Sabra06G0006300 Salix brachista HOM05D008343 ORTHO05D009841 2.1e-08 63.5 71 52.1
Lj4g0018363 Lotus japonicus HOM05D008343 ORTHO05D009841 2.8e-08 63.2 71 52.1
Potri.007G049400 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.8e-08 63.2 66 56.1
CSS0015714 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 3.6e-08 62.8 61 50.8
Prupe.3G151900 Prunus persica HOM05D008343 ORTHO05D009841 6.2e-08 62.0 47 63.8
Thecc.01G063900 Theobroma cacao HOM05D018273 ORTHO05D009841 6.2e-08 62.0 73 50.7
THA.LOC109116433 Tarenaya hassleriana HOM05D008734 ORTHO05D010780 8.1e-08 61.6 67 50.7
Glyma.05G099300 Glycine max HOM05D008343 ORTHO05D009841 1.1e-07 61.2 73 46.6
THA.LOC104807602 Tarenaya hassleriana HOM05D008734 ORTHO05D010780 1.1e-07 61.2 67 49.3
TAR376G1156 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.4e-07 60.8 51 60.8
Eucgr.H02228 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.4e-07 60.1 56 57.1
RcHm_v2.0_Chr1g0340091 Rosa chinensis HOM05D014781 ORTHO05D009841 2.4e-07 60.1 68 48.5
THA.LOC104813832 Tarenaya hassleriana HOM05D008734 ORTHO05D010780 5.3e-07 58.9 61 47.5
Manes.13G118000 Manihot esculenta HOM05D008343 ORTHO05D009841 6.9e-07 58.5 58 55.2
RcHm_v2.0_Chr2g0106731 Rosa chinensis HOM05D014781 ORTHO05D009841 6.9e-07 58.5 72 47.2
Nn1g04695 Nelumbo nucifera HOM05D008343 ORTHO05D009841 3.4e-06 56.2 67 50.7
Nn1g04691 Nelumbo nucifera HOM05D008343 ORTHO05D009841 4.4e-06 55.8 64 50.0
VMungo0251G2240 Vigna mungo HOM05D008343 ORTHO05D009841 5.8e-06 55.5 72 45.8


User provided reference genes

Program Settings