Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007508 Carpinus fangiana HOM05D008333 ORTHO05D010371 2.3e-105 385.6 191 100.0
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 9.3e-75 283.9 161 90.1
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 2.9e-44 182.6 146 63.7
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 7.4e-40 167.9 165 57.0
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 9.7e-32 141.0 153 50.3
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 1.0e-25 120.9 133 48.9
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 4.8e-23 112.1 138 44.2
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 1.6e-21 107.1 124 46.8
Manes.17G020900 Manihot esculenta HOM05D008333 ORTHO05D010371 7.7e-21 104.8 116 44.0
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 1.3e-20 104.0 128 43.0
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 1.3e-20 104.0 132 43.2
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 3.8e-20 102.4 160 36.9
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 5.0e-20 102.1 160 36.9
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 5.0e-20 102.1 160 36.9
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 1.1e-19 100.9 136 42.6
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 1.9e-19 100.1 115 43.5
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 3.2e-19 99.4 160 36.2
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 3.2e-19 99.4 160 36.2
VMungo0464G0738 Vigna mungo HOM05D008333 ORTHO05D010371 4.2e-19 99.0 135 38.5
Phvul.004G025900 Phaseolus vulgaris HOM05D008333 ORTHO05D010371 7.2e-19 98.2 133 39.8
TPR.G7262 Trifolium pratense HOM05D008333 ORTHO05D010371 7.2e-19 98.2 115 45.2
Eucgr.I01916 Eucalyptus grandis HOM05D008333 ORTHO05D010371 2.1e-18 96.7 150 40.0
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 2.7e-18 96.3 153 34.6
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 3.6e-18 95.9 153 35.9
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 6.1e-18 95.1 115 40.9
Eucgr.I01914 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.0e-17 94.4 185 34.6
Eucgr.L02760 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.8e-17 93.6 179 34.6
Gorai.006G023800 Gossypium raimondii HOM05D008333 ORTHO05D010371 3.3e-16 89.4 111 39.6
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.2e-15 86.7 113 38.1
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 3.7e-15 85.9 115 39.1
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 3.7e-15 85.9 115 39.1
TAR481G0008 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.8e-14 83.6 147 39.5
TAR481G0013 Trochodendron aralioides HOM05D008333 ORTHO05D010371 4.1e-14 82.4 147 38.8
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.2e-13 80.9 135 35.6
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.2e-13 80.9 166 31.9
Nn4g23042 Nelumbo nucifera HOM05D008333 ORTHO05D010371 1.6e-13 80.5 177 33.9
Lj7P401T71 Lonicera japonica HOM05D008333 ORTHO05D010371 3.5e-13 79.3 140 36.4
Gohir.D09G020550 Gossypium hirsutum HOM05D008333 ORTHO05D010371 1.0e-12 77.8 88 43.2
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.0e-12 77.8 130 36.9
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.7e-12 77.0 118 38.1
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 3.8e-12 75.9 117 39.3
Rhsim08G0065900 Rhododendron simsii HOM05D008333 ORTHO05D010371 3.8e-12 75.9 118 38.1
Rhsim08G0065500 Rhododendron simsii HOM05D008333 ORTHO05D010371 6.5e-12 75.1 118 38.1
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.1e-11 74.3 141 34.0
TAR371G0090 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.9e-11 73.6 114 39.5
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 2.7e-10 69.7 166 34.9
Rhsim08G0065000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.0e-09 67.8 117 36.8
Rhsim08G0065600 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.0e-09 67.8 117 36.8
Rhsim08G0065200 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.4e-09 67.4 137 33.6
PGSC0003DMG400016257 Solanum tuberosum HOM05D008333 ORTHO05D010371 5.2e-09 65.5 103 36.9
CSS0007512 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 1.5e-08 63.9 139 30.9
Nn3g17126 Nelumbo nucifera HOM05D008333 ORTHO05D010371 4.4e-08 62.4 130 35.4
Sopen04g006510 Solanum pennellii HOM05D008333 ORTHO05D010371 2.8e-07 59.7 109 34.9
VMungo0464G0892 Vigna mungo HOM05D036391 ORTHO05D035925 2.8e-07 59.7 109 37.6
FAN02G4458 Fragaria x ananassa HOM05D008333 ORTHO05D010371 4.8e-07 58.9 84 38.1
Eucgr.L03696 Eucalyptus grandis HOM05D008333 ORTHO05D010371 4.1e-06 55.8 75 37.3
Gorai.006G024300 Gossypium raimondii HOM05D008333 ORTHO05D010371 9.1e-06 54.7 70 37.1


User provided reference genes

Program Settings