Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 5.0e-100 367.9 196 100.0
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 4.7e-82 308.1 166 99.4
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.7e-71 273.1 167 82.0
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 4.6e-69 265.0 161 80.7
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 1.3e-68 263.5 166 78.3
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.3e-68 263.5 168 80.4
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.7e-68 263.1 168 79.2
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 3.0e-68 262.3 187 72.2
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 3.9e-68 261.9 189 72.5
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 8.6e-68 260.8 190 72.6
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.1e-67 260.4 168 78.0
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.5e-67 260.0 166 78.3
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.5e-67 260.0 166 78.3
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.2e-66 256.9 171 75.4
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 1.2e-66 256.9 171 75.4
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.6e-66 256.5 166 77.7
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 2.1e-66 256.1 184 72.3
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 2.8e-66 255.8 166 77.1
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 2.8e-66 255.8 166 77.1
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 8.1e-66 254.2 171 77.8
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 8.9e-65 250.8 164 77.4
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 1.5e-64 250.0 168 74.4
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 3.4e-64 248.8 166 74.7
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 4.4e-64 248.4 157 79.6
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 5.8e-64 248.1 166 75.3
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 5.8e-64 248.1 166 75.3
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 1.3e-63 246.9 187 66.8
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 1.7e-63 246.5 162 75.9
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 3.7e-63 245.4 167 73.1
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 3.7e-63 245.4 166 75.3
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 8.3e-63 244.2 166 72.9
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 8.3e-63 244.2 168 77.4
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 1.4e-62 243.4 166 75.9
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.4e-62 242.7 166 74.7
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.4e-62 242.7 166 74.7
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 2.4e-62 242.7 166 75.3
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 3.2e-62 242.3 169 73.4
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 4.1e-62 241.9 166 74.7
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 7.1e-62 241.1 170 72.9
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 7.1e-62 241.1 166 74.7
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 1.2e-61 240.4 162 75.9
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 1.6e-61 240.0 166 74.7
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 2.1e-61 239.6 167 71.9
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 4.6e-61 238.4 168 72.6
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 4.6e-61 238.4 153 77.8
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 4.6e-61 238.4 153 77.8
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 7.8e-61 237.7 168 71.4
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.0e-60 237.3 168 71.4
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.0e-60 237.3 167 73.1
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.0e-60 237.3 168 72.6
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 1.0e-60 237.3 161 75.2
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.7e-60 236.5 160 75.6
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 2.3e-60 236.1 162 74.7
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 3.0e-60 235.7 167 73.7
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 3.9e-60 235.3 165 72.7
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 3.9e-60 235.3 167 71.3
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 5.1e-60 235.0 173 69.9
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.3e-59 232.3 158 75.3
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.2e-58 230.3 171 70.2
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 1.2e-58 230.3 167 74.3
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 1.6e-58 229.9 167 73.1
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 2.1e-58 229.6 168 69.6
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 2.8e-58 229.2 154 74.7
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 3.6e-58 228.8 168 70.8
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 3.6e-58 228.8 168 72.6
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 3.6e-58 228.8 148 77.0
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 4.7e-58 228.4 201 64.7
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 6.2e-58 228.0 149 78.5
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 1.1e-57 227.3 160 71.9
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 1.8e-57 226.5 162 69.8
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 5.2e-57 224.9 167 65.3
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 6.8e-57 224.6 164 70.7
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 6.8e-57 224.6 166 69.3
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 8.9e-57 224.2 168 69.6
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 1.2e-56 223.8 176 65.9
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 3.4e-56 222.2 114 92.1
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 3.4e-56 222.2 116 90.5
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 5.8e-56 221.5 167 64.7
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 7.6e-56 221.1 193 62.2
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 1.7e-55 219.9 163 66.3
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.7e-55 219.9 163 66.3
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 2.2e-55 219.5 158 65.8
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 4.9e-55 218.4 164 65.9
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 4.9e-55 218.4 169 65.1
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 6.4e-55 218.0 162 67.9
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 8.4e-55 217.6 165 65.5
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 8.4e-55 217.6 160 70.6
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.1e-54 217.2 163 65.6
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.1e-54 217.2 165 63.6
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 1.9e-54 216.5 163 64.4
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.9e-54 216.5 115 87.8
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 2.4e-54 216.1 166 68.7
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 3.2e-54 215.7 163 65.0
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-54 215.7 163 64.4
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 3.2e-54 215.7 194 60.3
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 5.4e-54 214.9 164 65.2
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.6e-53 213.4 120 83.3
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 1.6e-53 213.4 116 87.9
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 2.1e-53 213.0 159 66.0
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 3.5e-53 212.2 193 57.5
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 6.0e-53 211.5 165 63.6
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 7.8e-53 211.1 164 65.9
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 1.3e-52 210.3 156 66.0
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 1.7e-52 209.9 167 64.7
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 3.9e-52 208.8 164 63.4
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 6.6e-52 208.0 125 80.0
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 8.7e-52 207.6 158 69.0
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.4e-49 200.3 115 81.7
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.1e-49 199.1 157 63.7
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 4.0e-49 198.7 118 77.1
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 6.9e-49 198.0 166 65.1
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 7.6e-48 194.5 119 77.3
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 6.6e-44 181.4 196 54.1
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 6.6e-44 181.4 124 68.5
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 8.1e-42 174.5 115 73.0
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 6.9e-41 171.4 122 64.8
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 1.2e-40 170.6 108 72.2
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 1.8e-36 156.8 115 70.4
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 2.5e-35 152.9 110 61.8
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 2.5e-35 152.9 117 58.1
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 3.7e-34 149.1 108 63.0
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 6.2e-34 148.3 106 62.3
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.2e-24 117.5 147 50.3
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 4.2e-22 109.0 59 84.7
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 4.2e-22 109.0 59 84.7
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 9.3e-22 107.8 89 64.0
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 7.4e-19 98.2 57 80.7
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 2.2e-15 86.7 66 68.2
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.9e-14 83.6 86 54.7


User provided reference genes

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