Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000547 Carpinus fangiana HOM05D003433 ORTHO05D003921 1.9e-58 229.2 133 100.0
Haze_06331 Corylus avellana HOM05D003433 ORTHO05D003921 8.8e-24 114.0 120 57.5
arahy.Tifrunner.gnm1.ann1.6T1YLT Arachis hypogaea HOM05D003433 ORTHO05D003921 1.3e-14 83.6 116 56.0
Lj4g0012011 Lotus japonicus HOM05D003433 ORTHO05D003921 1.7e-14 83.2 88 52.3
arahy.Tifrunner.gnm1.ann1.ICFM41 Arachis hypogaea HOM05D003433 ORTHO05D003921 2.2e-14 82.8 116 55.2
CANSAT35G0946 Cannabis sativa HOM05D003433 ORTHO05D003921 2.2e-14 82.8 117 59.0
Cc02_g14180 Coffea canephora HOM05D003433 ORTHO05D003921 2.8e-14 82.4 87 67.8
Hma1.2p1_1465F.1_g285360 Hydrangea macrophylla HOM05D003433 ORTHO05D003921 2.8e-14 82.4 86 65.1
CAN.G79.79 Capsicum annuum HOM05D003433 ORTHO05D003921 4.9e-14 81.6 89 64.0
DCAR_006581 Daucus carota HOM05D003433 ORTHO05D003921 6.3e-14 81.3 90 65.6
QL05p043563 Quercus lobata HOM05D003433 ORTHO05D003921 6.3e-14 81.3 94 68.1
Migut.M01089 Erythranthe guttata HOM05D003433 ORTHO05D003921 1.1e-13 80.5 90 50.0
GSVIVG01021141001 Vitis vinifera HOM05D003433 ORTHO05D003921 1.1e-13 80.5 83 65.1
Lj6g0016596 Lotus japonicus HOM05D003433 ORTHO05D003921 1.4e-13 80.1 90 66.7
Peaxi162Scf01018g00310 Petunia axillaris HOM05D003433 ORTHO05D003921 1.4e-13 80.1 91 61.5
Phvul.006G180300 Phaseolus vulgaris HOM05D003433 ORTHO05D003921 1.4e-13 80.1 116 57.8
SGA_v2.0_scaffold16G07656 Striga asiatica HOM05D003433 ORTHO05D003921 1.4e-13 80.1 87 51.7
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.4e-13 80.1 116 57.8
EL10Ac8g20460 Beta vulgaris HOM05D003433 ORTHO05D003921 1.8e-13 79.7 86 67.4
TAR487G0004 Trochodendron aralioides HOM05D003433 ORTHO05D003921 1.8e-13 79.7 83 66.3
Glyma.13G152372 Glycine max HOM05D003433 ORTHO05D003921 2.4e-13 79.3 116 56.9
Nitab4.5_0000376g0010 Nicotiana tabacum HOM05D003433 ORTHO05D003921 2.4e-13 79.3 89 67.4
vmacro15947 Vaccinium macrocarpon HOM05D003433 ORTHO05D003921 2.4e-13 79.3 96 56.2
CsaV3_6G050520 Cucumis sativus L. HOM05D003433 ORTHO05D003921 3.2e-13 79.0 93 65.6
unitig_26.g9354 Utricularia gibba HOM05D003433 ORTHO05D003921 3.2e-13 79.0 89 56.2
CSS0000003 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 4.1e-13 78.6 88 67.0
Nn1g04279 Nelumbo nucifera HOM05D003433 ORTHO05D003921 4.1e-13 78.6 84 69.0
CSS0002242 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 5.4e-13 78.2 90 65.6
Lalb_Chr20g0121441 Lupinus albus HOM05D003433 ORTHO05D003921 5.4e-13 78.2 116 57.8
PGSC0003DMG400010727 Solanum tuberosum HOM05D003433 ORTHO05D003921 5.4e-13 78.2 85 64.7
MSTRG.7374 Avicennia marina HOM05D003433 ORTHO05D003921 7.0e-13 77.8 90 64.4
Glyma.10G069300 Glycine max HOM05D003433 ORTHO05D003921 7.0e-13 77.8 115 59.1
Lalb_Chr15g0089601 Lupinus albus HOM05D003433 ORTHO05D003921 7.0e-13 77.8 116 56.9
CSS0048128 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 9.2e-13 77.4 88 68.2
FvH4_3g08340 Fragaria vesca HOM05D003433 ORTHO05D003921 9.2e-13 77.4 118 43.2
FAN11G2340 Fragaria x ananassa HOM05D003433 ORTHO05D003921 9.2e-13 77.4 118 43.2
FAN16G1189 Fragaria x ananassa HOM05D003433 ORTHO05D003921 9.2e-13 77.4 118 43.2
Oeu012169.1 Olea europaea HOM05D003433 ORTHO05D003921 9.2e-13 77.4 93 62.4
TWI38G1079 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 9.2e-13 77.4 92 64.1
HanXRQChr17g0561771 Helianthus annuus HOM05D003433 ORTHO05D003921 1.2e-12 77.0 86 59.3
Peaxi162Scf00042g00059 Petunia axillaris HOM05D003433 ORTHO05D003921 1.2e-12 77.0 88 63.6
Solyc02g077410.3 Solanum lycopersicum HOM05D003433 ORTHO05D003921 1.2e-12 77.0 89 62.9
FAN25G2053 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.6e-12 76.6 118 43.2
Manes.16G033800 Manihot esculenta HOM05D003433 ORTHO05D003921 1.6e-12 76.6 117 56.4
SalBow8G3514 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.6e-12 76.6 87 58.6
Thecc.06G178400 Theobroma cacao HOM05D003433 ORTHO05D003921 1.6e-12 76.6 91 62.6
CDE09G0432 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 2.0e-12 76.3 86 57.0
Duzib192G0658 Durio zibethinus HOM05D003433 ORTHO05D003921 2.0e-12 76.3 80 70.0
Nitab4.5_0001375g0090 Nicotiana tabacum HOM05D003433 ORTHO05D003921 2.0e-12 76.3 90 61.1
Psat1g201440 Pisum sativum HOM05D003433 ORTHO05D003921 2.0e-12 76.3 90 50.0
Potri.011G060800 Populus trichocarpa HOM05D003433 ORTHO05D003921 2.0e-12 76.3 89 65.2
SalBow7G0821 Salvia bowleyana HOM05D003433 ORTHO05D003921 2.0e-12 76.3 87 67.8
SalBow7G1387 Salvia bowleyana HOM05D003433 ORTHO05D003921 2.0e-12 76.3 87 67.8
Sed0002150 Sechium edule HOM05D003433 ORTHO05D003921 2.0e-12 76.3 93 64.5
TPR.G11762 Trifolium pratense HOM05D003433 ORTHO05D003921 2.0e-12 76.3 90 50.0
Duzib235G0342 Durio zibethinus HOM05D003433 ORTHO05D003921 2.7e-12 75.9 93 62.4
FAN21G1348 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.7e-12 75.9 105 43.8
Lsat_1_v5_gn_4_51640 Lactuca sativa HOM05D003433 ORTHO05D003921 2.7e-12 75.9 86 65.1
Rhsim02G0137600 Rhododendron simsii HOM05D003433 ORTHO05D003921 2.7e-12 75.9 100 62.0
Sabra04G0032200 Salix brachista HOM05D003433 ORTHO05D003921 2.7e-12 75.9 76 53.9
Sopen02g022310 Solanum pennellii HOM05D003433 ORTHO05D003921 2.7e-12 75.9 89 61.8
TWI63G1023 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 2.7e-12 75.9 92 64.1
Aqoxy1G02243 Aquilegia oxysepala HOM05D003433 ORTHO05D003921 3.5e-12 75.5 87 64.4
Sabra11G0041600 Salix brachista HOM05D003433 ORTHO05D003921 3.5e-12 75.5 102 45.1
Sed0018895 Sechium edule HOM05D003433 ORTHO05D003921 3.5e-12 75.5 90 48.9
Ca_18614_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 4.5e-12 75.1 90 58.9
Ca_30604_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 4.5e-12 75.1 90 58.9
Gohir.A10G028800 Gossypium hirsutum HOM05D003433 ORTHO05D003921 4.5e-12 75.1 93 62.4
Gohir.D10G029200 Gossypium hirsutum HOM05D003433 ORTHO05D003921 4.5e-12 75.1 93 62.4
Gorai.011G031100 Gossypium raimondii HOM05D003433 ORTHO05D003921 4.5e-12 75.1 93 62.4
arahy.Tifrunner.gnm1.ann1.KS62Q6 Arachis hypogaea HOM05D003433 ORTHO05D003921 5.9e-12 74.7 119 55.5
TWI38G1764 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 5.9e-12 74.7 90 65.6
arahy.Tifrunner.gnm1.ann1.JCGS1M Arachis hypogaea HOM05D003433 ORTHO05D003921 1.0e-11 73.9 118 56.8
Manes.03G104100 Manihot esculenta HOM05D003433 ORTHO05D003921 1.0e-11 73.9 85 61.2
PSO675G6144 Papaver somniferum HOM05D003433 ORTHO05D003921 1.0e-11 73.9 86 62.8
Potri.004G051100 Populus trichocarpa HOM05D003433 ORTHO05D003921 1.0e-11 73.9 87 66.7
DCAR_028035 Daucus carota HOM05D003433 ORTHO05D003921 1.3e-11 73.6 89 65.2
MD10G1286800 Malus domestica HOM05D003433 ORTHO05D003921 1.3e-11 73.6 92 50.0
Lalb_Chr09g0327891 Lupinus albus HOM05D003433 ORTHO05D003921 1.7e-11 73.2 86 65.1
Lalb_Chr18g0059311 Lupinus albus HOM05D003433 ORTHO05D003921 2.3e-11 72.8 116 55.2
PSO541G0211 Papaver somniferum HOM05D003433 ORTHO05D003921 2.3e-11 72.8 86 61.6
Prupe.4G054900 Prunus persica HOM05D003433 ORTHO05D003921 2.3e-11 72.8 120 40.8
CDE02G2062 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 2.9e-11 72.4 85 49.4
Duzib213G0833 Durio zibethinus HOM05D003433 ORTHO05D003921 2.9e-11 72.4 84 63.1
ECA234G4324 Erigeron canadensis HOM05D003433 ORTHO05D003921 2.9e-11 72.4 86 50.0
Medtr4g088110 Medicago truncatula HOM05D003433 ORTHO05D003921 2.9e-11 72.4 116 52.6
Duzib160G0603 Durio zibethinus HOM05D003433 ORTHO05D003921 3.9e-11 72.0 118 49.2
MD03G1236800 Malus domestica HOM05D003433 ORTHO05D003921 3.9e-11 72.0 86 66.3
TPR.G27870 Trifolium pratense HOM05D003433 ORTHO05D003921 5.0e-11 71.6 116 54.3
Gohir.A13G147700 Gossypium hirsutum HOM05D003433 ORTHO05D003921 6.6e-11 71.2 86 62.8
Gohir.D13G152368 Gossypium hirsutum HOM05D003433 ORTHO05D003921 6.6e-11 71.2 86 62.8
Gorai.013G172200 Gossypium raimondii HOM05D003433 ORTHO05D003921 6.6e-11 71.2 86 62.8
RcHm_v2.0_Chr5g0031891 Rosa chinensis HOM05D003433 ORTHO05D003921 6.6e-11 71.2 85 67.1
Psat7g117240 Pisum sativum HOM05D003433 ORTHO05D003921 8.6e-11 70.9 116 53.4
SMO228G0039 Selaginella moellendorffii HOM05D003433 ORTHO05D003921 8.6e-11 70.9 115 51.3
Sc05g0007340 Simmondsia chinensis HOM05D003433 ORTHO05D003921 8.6e-11 70.9 94 58.5
Ah.09g237750 Amaranthus hybridus HOM05D003433 ORTHO05D003921 1.1e-10 70.5 91 63.7
Gohir.A01G059900 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.1e-10 70.5 83 60.2
Gohir.D05G346500 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.1e-10 70.5 84 61.9
Gorai.009G374400 Gossypium raimondii HOM05D003433 ORTHO05D003921 1.1e-10 70.5 84 61.9
MD05G1307600 Malus domestica HOM05D003433 ORTHO05D003921 1.1e-10 70.5 92 47.8
QL08p023193 Quercus lobata HOM05D003433 ORTHO05D003921 1.1e-10 70.5 87 63.2
Ciclev10009748m.g Citrus clementina HOM05D003433 ORTHO05D003921 1.5e-10 70.1 88 63.6
SEGI_29868 Sequoiadendron giganteum HOM05D003433 ORTHO05D003921 1.5e-10 70.1 87 63.2
Sc17g0005850 Simmondsia chinensis HOM05D003433 ORTHO05D003921 1.5e-10 70.1 91 59.3
Atru.chr10.1756 Acer truncatum HOM05D003433 ORTHO05D003921 1.9e-10 69.7 108 50.0
Ciclev10016983m.g Citrus clementina HOM05D003433 ORTHO05D003921 1.9e-10 69.7 95 56.8
Oeu062323.1 Olea europaea HOM05D003433 ORTHO05D003921 1.9e-10 69.7 91 58.2
MSTRG.15837 Avicennia marina HOM05D003433 ORTHO05D003921 2.5e-10 69.3 87 60.9
AUR62031106 Chenopodium quinoa HOM05D003433 ORTHO05D003921 2.5e-10 69.3 102 42.2
Medtr2g014950 Medicago truncatula HOM05D003433 ORTHO05D003921 2.5e-10 69.3 115 55.7
Prupe.4G172600 Prunus persica HOM05D003433 ORTHO05D003921 2.5e-10 69.3 85 63.5
AUR62014899 Chenopodium quinoa HOM05D003433 ORTHO05D003921 3.3e-10 68.9 102 42.2
HPP92_024584 Vanilla planifolia HOM05D003433 ORTHO05D003921 3.3e-10 68.9 88 61.4
Cpa.g.sc841.3 Carica papaya HOM05D003433 ORTHO05D003921 5.6e-10 68.2 84 63.1
Ca_00401_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 5.6e-10 68.2 116 53.4
Gohir.A04G037300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 5.6e-10 68.2 85 61.2
Gorai.002G065700 Gossypium raimondii HOM05D003433 ORTHO05D003921 5.6e-10 68.2 83 61.4
AagrBONN_evm.TU.Sc2ySwM_340.301 Anthoceros agrestis HOM05D003433 ORTHO05D003921 7.3e-10 67.8 113 50.4
CiPaw.11G165900 Carya illinoinensis HOM05D003433 ORTHO05D003921 7.3e-10 67.8 88 63.6
Zm00001eb153500 Zea mays HOM05D003433 ORTHO05D003921 7.3e-10 67.8 89 62.9
Gohir.D01G046300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.2e-09 67.0 117 51.3
Sabra16G0246000 Salix brachista HOM05D003433 ORTHO05D003921 1.2e-09 67.0 84 53.6
unitig_22.g6752 Utricularia gibba HOM05D003433 ORTHO05D003921 1.2e-09 67.0 82 47.6
Zm00001eb370860 Zea mays HOM05D003433 ORTHO05D003921 1.2e-09 67.0 90 62.2
FvH4_3g19100 Fragaria vesca HOM05D003433 ORTHO05D003921 1.6e-09 66.6 87 63.2
FAN11G3375 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.6e-09 66.6 87 63.2
FAN16G0342 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.6e-09 66.6 87 63.2
FAN21G3894 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.6e-09 66.6 87 63.2
FAN25G3112 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.6e-09 66.6 87 63.2
COL.COLO4_31395 Corchorus olitorius HOM05D007416 ORTHO05D009329 2.1e-09 66.2 76 64.5
Thecc.07G100500 Theobroma cacao HOM05D003433 ORTHO05D003921 2.1e-09 66.2 118 51.7
Pp3c26_450 Physcomitrium patens HOM05D003433 ORTHO05D003921 2.8e-09 65.9 118 50.8
CiPaw.12G116100 Carya illinoinensis HOM05D003433 ORTHO05D003921 4.7e-09 65.1 85 63.5
Mapoly0007s0163 Marchantia polymorpha HOM05D003433 ORTHO05D003921 6.1e-09 64.7 117 50.4
PGR042G3683 Punica granatum HOM05D003433 ORTHO05D003921 6.1e-09 64.7 91 56.0
Haze_11286 Corylus avellana HOM05D000264 ORTHO05D000152 1.0e-08 63.9 70 75.7
Pp3c13_22350 Physcomitrium patens HOM05D003433 ORTHO05D003921 1.0e-08 63.9 118 50.8
Oeu046436.1 Olea europaea HOM05D003433 ORTHO05D003921 1.8e-08 63.2 96 58.3
Thhalv10001058m.g Eutrema salsugineum HOM05D003433 ORTHO05D003921 2.3e-08 62.8 92 53.3
Hund21199 Selenicereus undatus HOM05D003433 ORTHO05D003921 2.3e-08 62.8 91 58.2
Nn1g06363 Nelumbo nucifera HOM05D003433 ORTHO05D003921 3.1e-08 62.4 73 65.8
MSTRG.14718 Avicennia marina HOM05D003433 ORTHO05D003921 4.0e-08 62.0 88 54.5
Lalb_Chr03g0030831 Lupinus albus HOM05D003433 ORTHO05D003921 5.2e-08 61.6 84 42.9
Os05g0515900 Oryza sativa ssp. japonica HOM05D003433 ORTHO05D003921 5.2e-08 61.6 107 47.7
MELO3C007246.2 Cucumis melo HOM05D003433 ORTHO05D003921 6.8e-08 61.2 140 45.0
MD11G1257500 Malus domestica HOM05D003433 ORTHO05D003921 8.9e-08 60.8 73 68.5
A06p46240 Brassica napus HOM05D003433 ORTHO05D003921 1.5e-07 60.1 92 52.2
Sp2g10880 Schrenkiella parvula HOM05D003433 ORTHO05D003921 1.5e-07 60.1 92 50.0
THA.LOC104812872 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 2.0e-07 59.7 118 48.3
AL8G12520 Arabidopsis lyrata HOM05D003433 ORTHO05D003921 2.6e-07 59.3 92 51.1
A02p29570 Brassica napus HOM05D003433 ORTHO05D003921 4.4e-07 58.5 93 52.7
HanXRQChr16g0518571 Helianthus annuus HOM05D003433 ORTHO05D003921 4.4e-07 58.5 76 61.8
BcaB07g30864 Brassica carinata HOM05D003433 ORTHO05D003921 5.8e-07 58.2 93 52.7
BcaC06g34384 Brassica carinata HOM05D003433 ORTHO05D003921 7.5e-07 57.8 92 51.1
C07p29220 Brassica napus HOM05D003433 ORTHO05D003921 7.5e-07 57.8 92 51.1
BolC7t43464H Brassica oleracea HOM05D003433 ORTHO05D003921 7.5e-07 57.8 92 51.1
Carub.0008s0191 Capsella rubella HOM05D003433 ORTHO05D003921 7.5e-07 57.8 117 45.3
BcaC03g16818 Brassica carinata HOM05D003433 ORTHO05D003921 9.8e-07 57.4 93 52.7
BcaC04g21739 Brassica carinata HOM05D003433 ORTHO05D003921 9.8e-07 57.4 92 52.2
C09p28150 Brassica napus HOM05D003433 ORTHO05D003921 9.8e-07 57.4 92 52.2
BolC2t10739H Brassica oleracea HOM05D003433 ORTHO05D003921 9.8e-07 57.4 93 52.7
BraA02t07983Z Brassica rapa HOM05D003433 ORTHO05D003921 9.8e-07 57.4 93 52.7
Zm00001eb353100 Zea mays HOM05D003433 ORTHO05D003921 9.8e-07 57.4 118 33.1
AT5G46020 Arabidopsis thaliana HOM05D003433 ORTHO05D003921 1.3e-06 57.0 92 50.0
THA.LOC104798409 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 2.2e-06 56.2 115 47.0
C02p46910 Brassica napus HOM05D003433 ORTHO05D003921 2.9e-06 55.8 95 51.6
THA.LOC104806140 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 3.7e-06 55.5 120 46.7
CARHR175920 Cardamine hirsuta HOM05D003433 ORTHO05D003921 4.9e-06 55.1 95 50.5


User provided reference genes

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