Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.5e-290 1002.3 554 100.0
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 5.4e-224 781.2 528 77.3
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.9e-222 775.4 440 87.3
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 8.6e-222 773.9 526 76.6
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.5e-221 772.3 477 81.8
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.5e-221 772.3 532 80.8
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.2e-220 770.0 528 76.3
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 3.0e-219 765.4 550 78.5
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 4.0e-219 765.0 570 76.5
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 4.0e-219 765.0 565 78.2
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 8.9e-219 763.8 527 80.8
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.5e-218 763.1 549 78.1
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 3.4e-218 761.9 508 77.6
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 3.4e-218 761.9 532 79.3
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 3.4e-218 761.9 521 76.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.3e-217 760.0 535 80.0
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 2.8e-217 758.8 557 77.9
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.8e-217 758.8 495 79.2
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 4.9e-217 758.1 526 75.7
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 8.3e-217 757.3 528 80.1
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.4e-216 755.7 530 75.1
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 3.1e-216 755.4 539 79.4
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 4.1e-216 755.0 467 82.4
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 7.0e-216 754.2 462 82.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.0e-215 752.7 502 78.7
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.0e-215 752.7 481 80.0
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 2.7e-215 752.3 486 80.2
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.3e-214 750.0 495 78.6
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 2.3e-214 749.2 533 78.4
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.3e-214 749.2 531 79.8
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.8e-214 748.4 501 77.2
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.8e-214 748.4 459 82.1
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 2.1e-212 742.7 542 76.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.8e-212 742.3 499 78.4
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 6.1e-212 741.1 512 75.8
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 6.1e-212 741.1 537 76.9
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.4e-211 740.0 527 77.8
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.8e-211 739.6 445 83.4
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.0e-211 738.8 497 77.7
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.5e-210 736.5 538 77.3
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 3.4e-210 735.3 499 76.2
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 5.8e-210 734.6 437 85.4
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 7.5e-210 734.2 498 76.7
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.1e-208 730.3 531 73.1
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.3e-206 723.4 522 73.0
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.7e-206 723.0 561 68.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 2.3e-206 722.6 530 71.1
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 3.0e-206 722.2 531 73.1
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.1e-205 720.3 491 74.7
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.5e-205 719.9 495 74.3
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 4.3e-205 718.4 531 74.2
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 2.8e-204 715.7 502 73.1
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.8e-203 713.0 498 76.1
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 3.4e-202 708.8 433 80.4
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 3.4e-202 708.8 523 72.8
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-201 706.8 508 72.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.7e-201 706.4 464 78.7
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 2.9e-201 705.7 542 70.7
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.9e-201 704.9 441 80.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 4.9e-201 704.9 502 72.9
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.4e-200 703.4 493 74.6
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-199 699.9 498 74.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 2.7e-199 699.1 450 80.0
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 6.0e-199 698.0 498 74.3
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.0e-199 698.0 489 75.7
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.3e-198 696.8 530 70.8
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 6.6e-198 694.5 500 72.8
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.5e-197 693.3 494 76.1
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 1.9e-197 693.0 498 72.1
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.5e-197 692.6 494 74.5
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 3.3e-197 692.2 500 74.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 3.6e-196 688.7 515 69.5
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.4e-195 686.8 418 80.4
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 3.1e-195 685.6 553 73.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.2e-195 684.9 421 80.0
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 5.2e-195 684.9 421 80.3
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 5.2e-195 684.9 421 80.0
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 6.8e-195 684.5 435 78.2
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 8.9e-195 684.1 422 79.6
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 8.9e-195 684.1 424 81.4
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 2.6e-194 682.6 418 80.1
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 2.6e-194 682.6 418 80.1
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 3.4e-194 682.2 418 80.1
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 5.8e-194 681.4 491 72.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 7.5e-194 681.0 421 79.3
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 9.9e-194 680.6 422 79.4
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.4e-192 676.8 425 77.9
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.6e-191 673.3 421 78.4
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.7e-191 672.5 421 79.3
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.9e-190 668.7 443 76.7
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.6e-188 662.1 510 69.4
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.4e-187 660.2 420 78.1
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 8.9e-187 657.5 499 68.3
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 2.2e-185 652.9 420 79.0
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 4.7e-180 635.2 531 69.9
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.2e-178 630.6 501 69.5
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.4e-178 628.6 436 73.6
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.7e-177 626.7 497 69.2
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.4e-176 622.9 419 74.2
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.3e-173 612.5 368 83.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 9.6e-173 610.9 495 67.1
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 4.8e-172 608.6 503 64.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.1e-171 605.9 396 78.0
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 2.6e-170 602.8 458 69.9
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 3.4e-170 602.4 498 65.9
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 6.4e-169 598.2 534 63.1
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.2e-167 594.0 508 61.4
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.1e-167 593.2 506 63.8
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.5e-167 592.4 506 63.8
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 2.1e-164 583.2 508 62.4
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 8.1e-164 581.3 492 63.0
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.9e-160 570.1 472 65.5
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.5e-157 559.7 416 71.6
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 7.4e-157 558.1 420 69.8
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 6.2e-156 555.1 426 70.2
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.4e-155 553.9 412 71.1
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 4.6e-151 538.9 489 58.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 8.2e-148 528.1 484 59.7
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 4.5e-146 522.3 439 61.3
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.9e-146 521.9 484 58.7
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 9.4e-144 514.6 414 66.2
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 9.4e-136 488.0 507 57.6
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.1e-135 485.3 499 55.9
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 3.0e-134 483.0 506 57.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 2.8e-132 476.5 479 55.1
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 6.3e-132 475.3 398 64.8
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.7e-129 467.2 446 54.3
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 4.2e-128 462.6 497 56.9
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 6.1e-127 458.8 436 54.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.0e-126 458.0 432 56.2
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.0e-126 456.4 443 58.5
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.7e-125 451.4 431 55.9
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 2.2e-124 450.3 674 43.2
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.8e-123 447.2 499 54.5
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.5e-120 436.8 502 54.6
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.7e-119 433.3 475 54.9
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.1e-112 411.4 416 51.4
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.0e-106 390.6 346 58.4
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 4.2e-104 382.9 282 70.9
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 1.4e-102 377.9 446 50.2
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.2e-101 374.8 352 59.9
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 5.9e-98 362.5 247 75.3
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 7.8e-98 362.1 509 45.4
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 6.1e-95 352.4 438 47.0
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.4e-94 351.3 490 45.7
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.2e-92 344.0 298 58.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 3.2e-83 313.5 376 43.6
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.7e-76 290.0 331 47.4
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 2.4e-75 287.3 356 50.3
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 9.2e-75 285.4 264 59.1
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 3.5e-74 283.5 181 77.3
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.5e-72 278.1 267 62.9
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.3e-57 227.6 307 47.9
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 9.3e-43 179.1 98 86.7
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.5e-29 135.2 105 63.8
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.9e-27 128.3 122 60.7
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 4.2e-27 127.1 93 74.2
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 5.5e-27 126.7 194 42.8
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 6.1e-26 123.2 106 61.3
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 6.3e-23 113.2 227 41.4
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 2.4e-22 111.3 119 53.8
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 2.6e-21 107.8 148 41.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 6.5e-20 103.2 123 48.8
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 1.9e-19 101.7 119 51.3
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 7.2e-19 99.8 155 43.9
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.7e-18 97.8 71 67.6
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 5.1e-17 93.6 45 93.3
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 7.4e-16 89.7 83 55.4
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 2.2e-15 88.2 46 89.1
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 3.7e-15 87.4 75 53.3
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 1.7e-12 78.6 158 36.1
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.9e-12 77.8 344 25.9
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 2.9e-12 77.8 242 31.0
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 5.0e-12 77.0 104 44.2
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 6.1e-10 70.1 126 39.7
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.0e-09 69.3 51 64.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.0e-09 69.3 207 26.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.7e-08 63.5 247 23.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 5.7e-08 63.5 275 23.6
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.7e-07 60.8 202 22.8
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 1.8e-06 58.5 29 89.7


User provided reference genes

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